PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10585_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 27825.3 Da PI: 7.7452 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 108 | 195 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp f ++h + t+tl de+ +++ k+ +k++ l++GW++F +++L +gD +vF+l++ ++f + Neem_10585_f_3 108 FVKPMLQSHVTGGFWLGLPVYFGKNHlpH----YDETITLVDEEENEFPTKYLADKTG----LSGGWRGFSIDHELVDGDALVFQLVKPTTF--K 192 89*********************888433....4459***************666666....***********************9986666..5 PP EEE CS B3 94 vkv 96 v + Neem_10585_f_3 193 VFI 195 544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-24 | 101 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-20 | 101 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.06E-25 | 106 | 197 | No hit | No description |
SMART | SM01019 | 5.2E-19 | 108 | 200 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.1E-13 | 108 | 196 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.364 | 108 | 199 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MVESKLTYEE CRRQRLEENK KRMEELKLHV LAQSIKTPSP KPSPLKKRFS KQQAASVPDP 60 FEPLLTRRRG YQQRNLLNRV YASDEERAYA IERAEEVQSG LDSQYPSFVK PMLQSHVTGG 120 FWLGLPVYFG KNHLPHYDET ITLVDEEENE FPTKYLADKT GLSGGWRGFS IDHELVDGDA 180 LVFQLVKPTT FKVFIIRAYE LEDNKNKDNT KEETNSEDKN EDSDANHLRR SAKRTRSGKM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006487088.1 | 1e-128 | B3 domain-containing protein At3g19184-like isoform X2 | ||||
Swissprot | Q1G3M3 | 5e-78 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A067DTV8 | 1e-127 | A0A067DTV8_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006487087.1 | 1e-126 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 5e-65 | B3 family protein |
Publications ? help Back to Top | |||
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