PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10585_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 506aa MW: 57440.4 Da PI: 6.292 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.9 | 1.6e-17 | 141 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k++++s+v+ +l lp +f++ h+ + ++ ++e+e+g+++++++ s+r+ l++GWk F+++n+L egD++vF+l++ ++f +v Neem_10585_f_1 141 FWKAMVKSNVSHGFWLHLPMRFCKLHMP--KIDTVFIVENETGEEYKINY----ISQRTALSGGWKAFCDSNQLFEGDVLVFHLIEPTKF--KVY 227 6799*******************99973..477899**************....566778************************987777..888 PP EE-S CS B3 96 vfrk 99 ++r+ Neem_10585_f_1 228 IVRA 231 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 137 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.77E-23 | 138 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.68E-23 | 139 | 230 | No hit | No description |
PROSITE profile | PS50863 | 13.366 | 141 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-15 | 141 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-22 | 141 | 232 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MSIVIWLLLP FLRLLQANTT DAAKARLCFA ISEKILAFGH VEVHVIICQS SMPKTKKPDK 60 TGKIKRRKTA DSKMKLTQIL DKSPDPDYGT ELVGYDSSKE SRSRRKRAMI DDLYDQAKVN 120 SPVIERAEEV RANLAASCPS FWKAMVKSNV SHGFWLHLPM RFCKLHMPKI DTVFIVENET 180 GEEYKINYIS QRTALSGGWK AFCDSNQLFE GDVLVFHLIE PTKFKVYIVR ANGFLNAEAK 240 PLNSVPLDVE LDVATGDQTE EDRKNYKRAK HARPPPGFTQ DNTQSNSLMV LGSGNGHIED 300 QFDNDSEDLA SDTLKAMQLS ESTDNFKEVK SIDDFTILVD GLAIDSELSD HHRTKYYKLC 360 SSQNFFLHNH LLKSINCKLA AEIITQTVNI AEAIRACNLS TSQADYEIWD KTLKGFELLG 420 MNVGFLRARL NRLMSLAFNS EESEESKRLQ EVSLEQARAE EEIRTLELKL LTLKETVERL 480 DSEAESLRAK AEKHELIFHE EVTAPW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 67 | KKPDKTGKIKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423044.1 | 0.0 | B3 domain-containing protein Os01g0234100 isoform X2 | ||||
TrEMBL | V4UAJ3 | 0.0 | V4UAJ3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423044.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16717 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-33 | B3 family protein |