PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10550_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 293aa    MW: 32479.7 Da    PI: 9.3311
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10550_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.4e-19162195134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Neem_10550_f_2 162 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 195
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.75E-13155198No hitNo description
SMARTSM004011.6E-19156207IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.954156192IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.7E-16160196IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.83E-12161191No hitNo description
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
PfamPF003207.3E-17162195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTPIHLIPAP SPFQLAELKD EQQYLNLYLH SNSHLPPSSS LISCPIQYQT MIKLEVPQQH  60
GQKARTSHGG SSDDLQMLPS SSTQPTMSMN NKTREVGEGS TSDNGSSSKW MSSKMRLMQK  120
MTNSNCTGTD ESVKTTQKLQ YQLHDNNEVN SFNNSNNTIR VCSDCNTTTT PLWRSGPRGP  180
KSLCNACGIR QRKARRAMEA AAAGNGAISS TDTPCSKMKL HTKDKKWRTN HAAQYKKQCK  240
SPDPPHHQGQ RKLCFNDFAL TLSKNSALKQ VLPQDVEEAA ILLMELSCGF IHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475928.16e-89putative GATA transcription factor 22 isoform X2
TrEMBLA0A067GN401e-87A0A067GN40_CITSI; Uncharacterized protein
TrEMBLV4UNS51e-87V4UNS5_9ROSI; Uncharacterized protein
STRINGXP_006475927.14e-88(Citrus sinensis)
STRINGXP_006450837.14e-88(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16433713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-19cytokinin-responsive gata factor 1