PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10439_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ZF-HD
Protein Properties Length: 145aa    MW: 16391.5 Da    PI: 8.3691
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10439_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.48.1e-29456358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                    + +Y+eCl+NhAaslG++a+DGCgEf+++   ++ +++l+CaACgCHRnFHR+   
  Neem_10439_f_1  4 EHKYRECLRNHAASLGSYATDGCGEFTAD---NTYPTSLQCAACGCHRNFHRKVAY 56
                    679*************************8...6679*****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.5E-24554IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-24653IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.429754IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-17753IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.8E-1989145IPR009057Homeodomain-like
SuperFamilySSF466892.6E-892144IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-2198145IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEREHKYREC LRNHAASLGS YATDGCGEFT ADNTYPTSLQ CAACGCHRNF HRKVAYSSSS  60
SENIEATMEL MEYGNGAGGI RGPQVVVESP EAVERKGKKR FRTKFTPEQK EKMMAFAEKL  120
GWKLLRKDVE DEVERFCRGI GVSRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037025.12e-69PREDICTED: zinc-finger homeodomain protein 10
SwissprotQ9SEZ13e-32ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A061FW935e-68A0A061FW93_THECC; ZF-HD homeobox protein
STRINGEOY215269e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1852768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-28zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]