PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10430_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 325aa MW: 35392.3 Da PI: 5.5958

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10430_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.6e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Neem_10430_f_2 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	46	106	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-18	48	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-32	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-10	135	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MYQPNSVPSS SLVRSNSLVH GQHLDCGSSQ MDPMNGGNNV NNNPSLASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKVDKK 120 ETGDMLSSLD GSSGMQITEA LKLQMEVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVLSDAP 180 ESGDLDPSGD DCPETDKKTD PATPAPTSES PLQDKAAKEY ASAKSLSLDE SFSSQHESMT 240 PDSACNVGTP SESPKGESST KKQRVAMETT YTKPEMVLTH PILESSLSSS YQQQHNVFLS 300 GDQFDPSSGM SVGKEDHVEV SGNDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-24	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-24	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-24	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-24	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-24	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-24	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-24	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-24	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-24	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-24	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-24	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-24	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449962.1	0.0	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-123	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2H5N5F1	0.0	A0A2H5N5F1_CITUN; Uncharacterized protein
STRING	XP_006449962.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-99	G2-like family protein