PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10415_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 284aa    MW: 31813.1 Da    PI: 9.4796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10415_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10154201455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i  ++  L++l+P +    +k + Ka+iL + ++Y++ Lq
  Neem_10415_f_3 154 SHSLAERVRRAKISVRMTLLQSLVPGC----DKIVGKAQILDEIIKYVRTLQ 201
                     8*************************9....899****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-8148205No hitNo description
SuperFamilySSF474594.45E-14148209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-15150210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.494150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-9156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAAFSYQHPT FVFDSFLVPD TSNNMSSLPQ EATIIRARSC FSPMLPSTAN KCFQDIPLLA  60
QIHETTSPLH KFNSSIGKQD PNSSPAVAQI SSGDHMVSST EKKRKNVDVK VGRENRGEKE  120
RKNKRCAKKQ KKVAEEAPND YVHVRARRGQ ATDSHSLAER VRRAKISVRM TLLQSLVPGC  180
DKIVGKAQIL DEIIKYVRTL QTQVEQKLAS VTPMFSDFEV DFITNPLSQE SLDFHQLPPV  240
LDSSSTQLTS FPDEKTPNPN SILLHQEQNS KCNATISREF KLSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387149.25e-74transcription factor bHLH137-like
TrEMBLV4TFH54e-73V4TFH5_9ROSI; Uncharacterized protein
STRINGXP_006438852.17e-74(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2275434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-39bHLH family protein