PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10397_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bHLH | ||||||||
Protein Properties | Length: 482aa MW: 54302.5 Da PI: 6.3677 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 306 | 351 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr+++P+ K++Ka+ L Av YIk+L Neem_10397_f_1 306 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVAYIKEL 351 799***********************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.1E-49 | 25 | 206 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.96E-18 | 300 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.606 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.75E-15 | 305 | 355 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 306 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-11 | 306 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-16 | 308 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MEEIVSSSSS SYPIPFSHET SPTLLQRLQF IVQNRPEWWV YSIFWQPSKD VNGRLVLSWG 60 EGYFRGNKDF AARAANKQGH EPKFGFFLER KKGSKDVQVP FGEDMDLDRM VDGDVTDYEW 120 YYTVSVTRSF AIGDGVLGRV FSSGDFVWLT GDHELQLYEC ERVKEARMHG IQTLVCLATP 180 CGVVELGSSD MIKEDWNLVQ LAKTIFGPDI ASLLSKQANS ETQVQGPGRN VPLLDIGMFP 240 GPQKEWTLEE KPRDGDIKKE IPVLGRSSSD SGPSDSDGNF VSGYTDNVTS KKRGRKPTTG 300 RESPLNHVEA ERQRRERLNH RFYALRSVVP NVSKMDKASL LADAVAYIKE LKAKIDQLET 360 KLQEQSRKSK VYGMNIYDSQ STTSTYDRIL MRPTAASSHC VSAMDVDVKI VGSEAMIRVQ 420 CPDINYPAAK LMDALRDLEF QVHHASVSSV RELMLQDVVV RVPEGLISEE VIRTAIFQKM 480 QH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 6e-29 | 23 | 206 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 6e-29 | 23 | 206 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 6e-29 | 23 | 206 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 6e-29 | 23 | 206 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 311 | 316 | RQRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045664.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A067GDM6 | 0.0 | A0A067GDM6_CITSI; Uncharacterized protein | ||||
STRING | XP_006439218.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3039 | 21 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 7e-66 | bHLH family protein |