PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10372_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 25443.3 Da PI: 6.6287 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 14 | 64 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd +l +v+++G W++Ia+ ++ gRt++++k++w++ Neem_10372_f_1 14 KGTWTPEEDRKLMAYVTRYGCWnwrqlpKWSAIAAQLP-GRTDNEIKNHWHT 64 799*****************55****************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.38E-16 | 3 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 5 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.489 | 9 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-11 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-11 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MARTPCCDKT GLKKGTWTPE EDRKLMAYVT RYGCWNWRQL PKWSAIAAQL PGRTDNEIKN 60 HWHTSLKKRL KQTSVTNEAK RKPKHPIYDD IDRQGEPIAS GNSQEGESKV KVDSREGESK 120 LNNHHLNHMI TPSILESSPS SSQPSSSDQL SSITTDTSVV SSTELMLDNK DVLFQPYAEA 180 SGSFWTEPFL ADNSFNLYIS NDLLAPLSST GYASPHSSFL DGEILWP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 71 | LKKRLKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021296898.1 | 1e-68 | transcription factor MYB4-like | ||||
TrEMBL | A0A061E3S1 | 2e-66 | A0A061E3S1_THECC; Myb domain protein 15, putative | ||||
STRING | EOX99262 | 4e-67 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 3e-24 | myb domain protein 41 |