PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_102_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ZF-HD
Protein Properties Length: 243aa    MW: 26769.7 Da    PI: 7.2026
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_102_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.32.8e-3152105458
   ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                   vrY+eClkN+A+++G havDGCgEfm++ geegt +alkCaAC+CHRnFHR+e++
  Neem_102_f_4  52 VRYRECLKNQAVNIGRHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETD 105
                   89*************************9.999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.7E-2952104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-2753103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2253105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.06454103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.1E-21167241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-32169242IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-27180236IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEFEEHEEQE EEIGAPLPTD YDSLSNSVRP QMAPTTAAGE GASTARKTGT PVRYRECLKN  60
QAVNIGRHAV DGCGEFMAAG EEGTLDALKC AACNCHRNFH RKETDGGDSG PLIYHQQHPH  120
HHQQFQPYYR APPPPAGYLH LTPPRPLALP SSSGGGGAYS REDEDVSNPS SSGGGSGGTR  180
KRFRTKFTPE QKEKMLGFAE QLGWRIQKHD EASVEQFCAE TGVKRHVLKV WMHNNKHTLG  240
KKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-291792381675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605260.11e-111zinc-finger homeodomain protein 2-like
SwissprotQ9SB617e-80ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2C9WGM61e-108A0A2C9WGM6_MANES; Uncharacterized protein
STRINGXP_010266504.11e-103(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.18e-69homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]