PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10270_a_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

M-type_MADS

Protein Properties

Length: 72aa MW: 8183.53 Da PI: 10.7449

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10270_a_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.3	6.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl y++ Neem_10270_a_1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLSQYAT 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.777	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.48E-35	2	61	No hit	No description
SuperFamily	SSF55455	1.57E-29	2	64	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLSQYATD 60 SWYDLSINSI LS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-21	1	59	1	59	MEF2C
5f28_B	4e-21	1	59	1	59	MEF2C
5f28_C	4e-21	1	59	1	59	MEF2C
5f28_D	4e-21	1	59	1	59	MEF2C
6byy_A	5e-21	1	59	1	59	MEF2 CHIMERA
6byy_B	5e-21	1	59	1	59	MEF2 CHIMERA
6byy_C	5e-21	1	59	1	59	MEF2 CHIMERA
6byy_D	5e-21	1	59	1	59	MEF2 CHIMERA
6bz1_A	5e-21	1	59	1	59	MEF2 CHIMERA
6bz1_B	5e-21	1	59	1	59	MEF2 CHIMERA
6bz1_C	5e-21	1	59	1	59	MEF2 CHIMERA
6bz1_D	5e-21	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN214349	1e-53	JN214349.1 Litchi chinensis APETALA1 (AP1) mRNA, complete cds.
GenBank	JQ062978	1e-53	JQ062978.1 Litchi chinensis APETALA1-like protein (AP1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027773500.1	2e-35	agamous-like MADS-box protein AGL8 homolog isoform X3
Swissprot	O22328	2e-34	AGL8_SOLCO; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A438I388	2e-36	A0A438I388_VITVI; Agamous-like MADS-box protein AGL8
TrEMBL	A0A438JYR5	2e-36	A0A438JYR5_VITVI; Agamous-like MADS-box protein AGL8
STRING	XP_004172815.1	4e-37	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	4e-36	AGAMOUS-like 8