PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10206_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARR-B
Protein Properties Length: 648aa    MW: 72481.9 Da    PI: 6.6405
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10206_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.84.9e-28317371156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Neem_10206_f_1 317 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                     5689*****************.********************************96 PP
2Response_reg25.95.1e-10201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++   +  l+  le  +y +v  + +  eal  + ek   +++ ++ +  ++ dG+  +k +++++ +lp i+ +     +++ +++ +G
  Neem_10206_f_1  20 VLLLDEDSCAAAELKLKLEAMDY-VVSIFCNENEALSAISEKPesFHVAIVEVTASNTDGS--FKFLETAK-ELPTIMTSNIHCLSTTMKCIALG 110
                     78899999999999999******.***************888778***************7..66676666.899999998888*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp+++++l++
  Neem_10206_f_1 111 AVEFLRKPVSEDKLRN 126
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.0E-1616181No hitNo description
SuperFamilySSF521727.68E-1516135IPR011006CheY-like superfamily
SMARTSM004480.007218128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.16919132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.08E-921132No hitNo description
PROSITE profilePS5129415.114314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-27315374IPR009057Homeodomain-like
SuperFamilySSF466891.79E-18316374IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-25317371IPR006447Myb domain, plants
PfamPF002491.2E-8320369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MVCTANDLSA WKDFPKGLRV LLLDEDSCAA AELKLKLEAM DYVVSIFCNE NEALSAISEK  60
PESFHVAIVE VTASNTDGSF KFLETAKELP TIMTSNIHCL STTMKCIALG AVEFLRKPVS  120
EDKLRNIWQH VLHKAFNAGG NVLSDSLKPV KESVVSMLHL QLENGESKNK TSENAENVSL  180
TQQNDNEQLE VIDKYPAPST PQLKHGGRLL DDVDCQDNTN CSTEKEIGEQ DGESKLVETT  240
CDHSVAEGTL QEGQPQMPIE TAVKEEPDSN DGSKTDCNMY SNPLDKENVK ESDSVVENPI  300
KASGPHNFSG TKSNRKKMKV DWTPELHKKF VQAVEQLGVD QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HRRHILPKED DRRWPQSNQT QKNYYPHKPI MAFPPYHSNH ILPHAPVYPV  420
WGAPSNHHPA SVQMWGLPGY PQWQQADSWH WKPYPGMHAD TWGCPVMPPP HGSYSSFPQN  480
ASSFHNSTAV DNSYSIPQNS FDLHPAEDII DKVVKEAISK PWLPLPLGLK PPSAESVLAE  540
LSRQGISTIP PDHINGSQLL TMPPPQLLMS CHTGTQTQPK DPSGVVIQCT TTAPIANVMS  600
HRDTNPTKRS IRGSDPMHYH RCKMAYYPNK RPTTVHVYNF TPMKHLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16322371655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436789.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485404.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485405.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-152APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLV4VCE50.0V4VCE5_9ROSI; Uncharacterized protein
STRINGXP_006485404.10.0(Citrus sinensis)
STRINGXP_006436789.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-150ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]