PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10098_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 690aa MW: 80026.9 Da PI: 6.2808

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10098_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.5	6.9e-21	67	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Neem_10098_f_2 67 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVRKKPGGEHHRDRKSVRCGCDAKMYLSKEVvdgISQWFVVQFSNVHNHELL 158 59******************8888.****************9******************99866789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-18	67	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-21	290	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	562	597	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-6	564	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0026	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MISAKNIWMR RQQCPCGDWK CYVTHEGDAE ETSIASQLVK NDENSSNEAM VAPYVGMVFK 60 SDDDAFEYYG NFARKNGFSI RKERSRLSPQ LGIYKRDFVC YRSGFAPVRK KPGGEHHRDR 120 KSVRCGCDAK MYLSKEVVDG ISQWFVVQFS NVHNHELLEG DQVRLLPAYR KIHEADQERI 180 LLLSKAGFPI HRIVKVLELE KGIQGGQLPF LERDVRNFVQ NRKRAIQEND ALLTEKREND 240 TMELLDICKA TKETDENFVY NFTVDESNKV ENIAWSYPES VNAYTVFGDV VYFDTTYRSV 300 TYGMIFGAWL GIECNGRTIF FGCALLQDET LHSFAWALQT FVRFMKGRCP QTIITDLDPG 360 LRDAIRRELP NTRHVISLYN ILPKLSGWFS LSLGPQFSEF KSEFDALCHV ENTEDFELRW 420 SQMVSMFGLG SDKHIALLYA IRTSWASSYT RGYFLAQITT TVYSKSVDAF LKGIFTAQTC 480 LRSFFEQIGL STNLQNQPRR EMQYMHMKTC MPIEEQARRT LTPFAFTAFQ HELVLAMQYA 540 ASEMSNGSYL VRHFKKMDGE CLVVWIPEDE QIHCSCKEFE SSGTLCRHAF RVFIAKNYFQ 600 LPEKYFLSRW RRESSLAFFY DPDTQHNNDE WLQEFYSLTE TLLSESSVTK ERSDYICKEL 660 TKELTRLLNE VRDMPDSDGI AMDFTLSPTD

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MISAKNIWMR RQQCPCGDWK CYVTHEGDAE ETSIASQLVK NDENSSNEAM VAPYVGMVFK  60
SDDDAFEYYG NFARKNGFSI RKERSRLSPQ LGIYKRDFVC YRSGFAPVRK KPGGEHHRDR  120
KSVRCGCDAK MYLSKEVVDG ISQWFVVQFS NVHNHELLEG DQVRLLPAYR KIHEADQERI  180
LLLSKAGFPI HRIVKVLELE KGIQGGQLPF LERDVRNFVQ NRKRAIQEND ALLTEKREND  240
TMELLDICKA TKETDENFVY NFTVDESNKV ENIAWSYPES VNAYTVFGDV VYFDTTYRSV  300
TYGMIFGAWL GIECNGRTIF FGCALLQDET LHSFAWALQT FVRFMKGRCP QTIITDLDPG  360
LRDAIRRELP NTRHVISLYN ILPKLSGWFS LSLGPQFSEF KSEFDALCHV ENTEDFELRW  420
SQMVSMFGLG SDKHIALLYA IRTSWASSYT RGYFLAQITT TVYSKSVDAF LKGIFTAQTC  480
LRSFFEQIGL STNLQNQPRR EMQYMHMKTC MPIEEQARRT LTPFAFTAFQ HELVLAMQYA  540
ASEMSNGSYL VRHFKKMDGE CLVVWIPEDE QIHCSCKEFE SSGTLCRHAF RVFIAKNYFQ  600
LPEKYFLSRW RRESSLAFFY DPDTQHNNDE WLQEFYSLTE TLLSESSVTK ERSDYICKEL  660
TKELTRLLNE VRDMPDSDGI AMDFTLSPTD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467286.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_006467287.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A067GT76	0.0	A0A067GT76_CITSI; Uncharacterized protein
STRING	XP_006467286.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]