PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10058_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 405aa    MW: 46139.1 Da    PI: 4.9607
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10058_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d+++++++sws++++sf+v+++ efa+++Lpk+Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++
  Neem_10058_f_3  14 FLAKTYEMVDDPSTDSVVSWSASNKSFIVWNPPEFARDLLPKFFKHSNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFVRGQPHLLKN 99 
                     9********************999****************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Neem_10058_f_3 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.6E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.1E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDEAQGGSNS LPPFLAKTYE MVDDPSTDSV VSWSASNKSF IVWNPPEFAR DLLPKFFKHS  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFV RGQPHLLKNI HRRKPVHSHS NQNLHGQGNP  120
LTEFERQTLK DDIERLKKEK EMLLLELQKH EQERQGFESQ MQLLKDRFQN MEQRQQRILS  180
LVARALQRQG LASNLGAQLE THDRKRRLPR IGYFYDEANI EDNQTGTSQA VPRVSAETTN  240
VLSSNMEQVE QLESALTFWE NIVQDVGQSC FQPTSSPEFD ESTSCADSPA ISCIQLNVEV  300
RPKSPGIDMN SEPAVTAAPE PVASQEPVAA TTAPAPTGVN DMFWEQFLTE NPGSTDTQEV  360
QSERRDSDGR KSENKTADHG RFWWNMRNVN SLSEQMGHLT PAERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-25710322129Heat shock factor protein 1
5d5v_B8e-25710322129Heat shock factor protein 1
5d5v_D8e-25710322129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449558.10.0heat stress transcription factor A-4a
RefseqXP_024047370.10.0heat stress transcription factor A-4a
RefseqXP_024047371.10.0heat stress transcription factor A-4a
RefseqXP_024047372.10.0heat stress transcription factor A-4a
SwissprotO494031e-138HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLV4TQJ70.0V4TQJ7_9ROSI; Uncharacterized protein
STRINGXP_006449558.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-125heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]