PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy022330
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 270aa    MW: 30063.6 Da    PI: 9.4057
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59552834PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.9e-18152186135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Ahy022330 152 CLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRL 186
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-751241IPR016679Transcription factor, GATA, plant
SMARTSM004014.5E-16146196IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.044146182IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14149210No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14150184IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.71E-13151198No hitNo description
PfamPF003206.0E-16152186IPR000679Zinc finger, GATA-type
PROSITE patternPS003440152177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
XQFSGGELCV PYDDMAELEW LSNFVEDSFS TEEDLKTLQL LSGGGAAAIN GRKPQTPESS  60
SSSENALHPP FDTARNAPFL LHQETPLPGK ARSKRSRAAP GDWSTRLLHL STPPPPKLQT  120
SAAEHKPPTP KVAAPTMTKR REANAECLGR KCLHCGADKT PQWRTGPMGP KTLCNACGVR  180
FKSGRLVPEY RPAASPTFVS TKHSNSHRKV LELRRQKDMQ RQQQQQQQLM SQTSIFGVSN  240
GGDEFLIHHH HHHPHHHQQH HCGPDFRHVI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016177035.10.0GATA transcription factor 9
RefseqXP_025676401.10.0GATA transcription factor 9
SwissprotP697819e-69GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A444XCG80.0A0A444XCG8_ARAHY; GATA transcription factor
STRINGXP_007135644.11e-128(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-61GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]