PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy021884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 15480.4 Da PI: 6.6831 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.9 | 2.2e-14 | 29 | 109 | 9 | 95 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvk 95 + ++ lpkkf++++g++ s l l+ ++g +W+v ++g++++++GWkeFv L++g ++ F+++ g+s v+ Ahy021884 29 TL-QDENFKLPKKFTRKYGSD--LSNPLYLKPPDGSEWRVDW--IIHDGGILFKEGWKEFVAYYSLDDGYVLRFEYNiGTSH--IEVQ 109 44.44559**********988..6777***************..99999**************************9733333..3555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-19 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.885 | 20 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.08E-14 | 20 | 112 | No hit | No description |
SMART | SM01019 | 1.1E-10 | 21 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-11 | 30 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MASSNYQQND HSPSNSPVIR FFKVILGKTL QDENFKLPKK FTRKYGSDLS NPLYLKPPDG 60 SEWRVDWIIH DGGILFKEGW KEFVAYYSLD DGYVLRFEYN IGTSHIEVQI SDMSGLQIKY 120 PVNDQIKEHP PQH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025624611.1 | 2e-93 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A445B1U9 | 5e-92 | A0A445B1U9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G20150.1 | 1e-30 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-18 | B3 family protein |