PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy019434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 154aa MW: 17787.1 Da PI: 8.7604 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.4e-08 | 16 | 45 | 19 | 48 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 G +W+++++ g+ R++k+c++rw +yl Ahy019434 16 NGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 45 57779*********99************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.6e-17 | 55 | 95 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ Ahy019434 55 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 95 6779**************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 39 | 4 | 47 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.959 | 7 | 45 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-11 | 12 | 52 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 15 | 45 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-22 | 32 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.609 | 46 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-14 | 50 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-25 | 53 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-14 | 55 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.80E-11 | 58 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MDCRGGQEAD QLLLTNGQCC WRAVPKLAGL LRCGKSCRLR WTNYLRPDLK RGLLSEYEEK 60 MVIDLHAQLG NRWSKIASHL PGRTDNEIKN HWNTHIKKKL KKLGIDPVTH KPLSNNTTHQ 120 NQIKPEQPPL QEQEQDHHES SIIVEPEIKE AEKX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-22 | 7 | 100 | 16 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015956739.1 | 1e-99 | protein ODORANT1 | ||||
Refseq | XP_025690341.1 | 1e-99 | transcription factor MYB20 | ||||
Swissprot | Q9C7U7 | 3e-68 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | A0A445DQC8 | 3e-98 | A0A445DQC8_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G33620.1 | 7e-73 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 3e-70 | myb domain protein 20 |
Publications ? help Back to Top | |||
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