PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy018394

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 658aa MW: 76210 Da PI: 7.8997

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59546060	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.5e-21	51	134	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a+++++++++++w++ ++ leHnH l Ahy018394 51 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HMRKETRTGCPAMIRMRLMDSQRWRILEVTLEHNHML 134 5899*************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-18	51	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-27	253	341	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.644	540	576	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-4	548	572	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	551	578	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
XLPEGECIEA QKEEDGSLVE LDCRNGFSEG RKEFVTPAVG MEFESYDDAY NYYICYAKEV 60 GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNHMR KETRTGCPAM IRMRLMDSQR 120 WRILEVTLEH NHMLGSKIHK SVKKMGTGTK KKSLPSSNAE VHTVKLYRAL VIDAGGNSSA 180 ISNAREDRTL SEFCNRLNLK RGDTQAIYNY LCRMQLTNPN FFYLMDFNDE GHLRNAFWAD 240 SRSRAACGYF GDVIYFDNTY LSSKYEIPLV AFVGINHHGQ SVLLGCGLLA GETIESYVWL 300 FRAWITSLSG CSPQTIITDK CKVLQSAIAE VFPQSLHRFG LPLIMKKVPE KLGGLRNYDM 360 IRKELIKAIY ETLKMNEFES AWAFMVQRFG VGDHEWLCSL YEDRNCWAPV YVKDTFFAGM 420 SATRPGESFT PFFDRFVHKQ TPLKEFLDKY ELALHKKHKE EALADIESRS STPLLKTRCS 480 FELQLSRMYT RQMFLKFQFE VEEMYSCFGT TQLHVDGPVI IFLVKERVLC EGNRREIRDF 540 EVLYSRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI PSRYILSRWK KDYKRLHIPD 600 HNTGVPDDID HSQWSNQLFR SALQVVEEGT VSVDHYNVAL HAIEESLNKV HDVEYRQI

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

XLPEGECIEA QKEEDGSLVE LDCRNGFSEG RKEFVTPAVG MEFESYDDAY NYYICYAKEV  60
GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNHMR KETRTGCPAM IRMRLMDSQR  120
WRILEVTLEH NHMLGSKIHK SVKKMGTGTK KKSLPSSNAE VHTVKLYRAL VIDAGGNSSA  180
ISNAREDRTL SEFCNRLNLK RGDTQAIYNY LCRMQLTNPN FFYLMDFNDE GHLRNAFWAD  240
SRSRAACGYF GDVIYFDNTY LSSKYEIPLV AFVGINHHGQ SVLLGCGLLA GETIESYVWL  300
FRAWITSLSG CSPQTIITDK CKVLQSAIAE VFPQSLHRFG LPLIMKKVPE KLGGLRNYDM  360
IRKELIKAIY ETLKMNEFES AWAFMVQRFG VGDHEWLCSL YEDRNCWAPV YVKDTFFAGM  420
SATRPGESFT PFFDRFVHKQ TPLKEFLDKY ELALHKKHKE EALADIESRS STPLLKTRCS  480
FELQLSRMYT RQMFLKFQFE VEEMYSCFGT TQLHVDGPVI IFLVKERVLC EGNRREIRDF  540
EVLYSRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI PSRYILSRWK KDYKRLHIPD  600
HNTGVPDDID HSQWSNQLFR SALQVVEEGT VSVDHYNVAL HAIEESLNKV HDVEYRQI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029153592.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A151T6B6	0.0	A0A151T6B6_CAJCA; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_007147533.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]