PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy017756

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ZF-HD

Protein Properties

Length: 274aa MW: 29757.9 Da PI: 7.1713

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59521862	PU_ref	Unigene	View CDS
gnl\|UG\|Ahy#S59539897	PU_unref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.7	1.6e-29	58	115	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s+GghavDGC+E + geegt +a+ CaAC+CHRnFHR+e + e Ahy017756 58 GVRYRECQKNHAVSIGGHAVDGCCELFLAAGEEGTLEAVICAACNCHRNFHRKEIDGE 115 79*********************99999*********************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-18	49	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.2E-26	59	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-25	60	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.271	61	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.79E-21	197	272	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-33	198	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.5E-26	211	267	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEFDEHEDQE EEEMGIPEPP PAPQGYDSFG NSAARSKSEG GGGGGAAAVT PGRKGGTGVR 60 YRECQKNHAV SIGGHAVDGC CELFLAAGEE GTLEAVICAA CNCHRNFHRK EIDGETSPYH 120 QNTPRPQQPP QPPLHHHQYH QHHQFSPYYH RAPPPPTGGY LHLSTPPVSQ HRPLALPAAA 180 SGGGGFYKEE EDMSNPSSSG GGGGGSGSGT KKRFRTKFTQ EQKDKMLAFA EQLGWRIQKH 240 DESAVENFCA ETGVKRHVLK VWMHNNKHTL GKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-29	210	269	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020962147.1	1e-151	zinc-finger homeodomain protein 2 isoform X5
Refseq	XP_025667273.1	1e-151	zinc-finger homeodomain protein 2 isoform X4
Swissprot	Q6YXH5	7e-71	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A445BTK5	1e-147	A0A445BTK5_ARAHY; Uncharacterized protein
STRING	GLYMA06G09970.1	1e-116	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-64	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]