PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Ahy017756 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ZF-HD | ||||||||||||
Protein Properties | Length: 274aa MW: 29757.9 Da PI: 7.1713 | ||||||||||||
Description | ZF-HD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.7 | 1.6e-29 | 58 | 115 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s+GghavDGC+E + geegt +a+ CaAC+CHRnFHR+e + e Ahy017756 58 GVRYRECQKNHAVSIGGHAVDGCCELFLAAGEEGTLEAVICAACNCHRNFHRKEIDGE 115 79***********************99999***********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-18 | 49 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.2E-26 | 59 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-25 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.271 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.79E-21 | 197 | 272 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-33 | 198 | 273 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.5E-26 | 211 | 267 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEFDEHEDQE EEEMGIPEPP PAPQGYDSFG NSAARSKSEG GGGGGAAAVT PGRKGGTGVR 60 YRECQKNHAV SIGGHAVDGC CELFLAAGEE GTLEAVICAA CNCHRNFHRK EIDGETSPYH 120 QNTPRPQQPP QPPLHHHQYH QHHQFSPYYH RAPPPPTGGY LHLSTPPVSQ HRPLALPAAA 180 SGGGGFYKEE EDMSNPSSSG GGGGGSGSGT KKRFRTKFTQ EQKDKMLAFA EQLGWRIQKH 240 DESAVENFCA ETGVKRHVLK VWMHNNKHTL GKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-29 | 210 | 269 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020962147.1 | 1e-151 | zinc-finger homeodomain protein 2 isoform X5 | ||||
Refseq | XP_025667273.1 | 1e-151 | zinc-finger homeodomain protein 2 isoform X4 | ||||
Swissprot | Q6YXH5 | 7e-71 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A445BTK5 | 1e-147 | A0A445BTK5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G09970.1 | 1e-116 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-64 | homeobox protein 22 |
Publications ? help Back to Top | |||
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