PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy016973

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 227aa MW: 25906.2 Da PI: 9.5375

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58471154	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.2	3.7e-07	80	99	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Ahy016973 80 FSCPVCPKTFNRYNNLQMHM 99 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.67E-6	75	103	No hit	No description
PROSITE profile	PS50157	10.866	80	107	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.2E-5	80	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.74E-5	146	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
XQLNMNQKQL EPLPLLSSFL GSSTCSSSEL SQNLKEDVTV ALHIGLPDNS HDNQNVEPLQ 60 APNNYWIPTE EQIIIGFSHF SCPVCPKTFN RYNNLQMHMW GHGSEYRRGP ESLKRTHPRP 120 LLEIACYCCK GGCKNNIEHP RAKPLKDFRT LQTHYKRKHG PKPFSCRKCS KNLAVKGDWR 180 THEKNCGKRW LCLCGSDFKH KRSLKDHIKA FGFGHTPFSS SSTSSSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	115	ESLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015957769.2	1e-166	protein TRANSPARENT TESTA 1-like
Refseq	XP_025691611.1	1e-166	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	9e-94	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A444ZS66	1e-165	A0A444ZS66_ARAHY; Uncharacterized protein
STRING	XP_004516564.1	1e-127	(Cicer arietinum)
STRING	XP_007141186.1	1e-127	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	2e-94	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]