PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ahy016226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 533aa MW: 59798.7 Da PI: 5.8481 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 323 | 5.8e-99 | 118 | 467 | 3 | 346 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 + Ll++A+a++++++++ q+l++ l+el+sp+gd+ q+laayf++AL +r+++ +++++++l++ ++++ + +++ + + f+evsP+ +f+h++aN aI Ahy016226 118 DILLDAARALADKNTARLQHLMWMLNELSSPYGDTEQKLAAYFLQALFSRMTHAGDRTFRTLTSASDKTCSFESTRKTVLKFQEVSPWTTFGHVAANGAI 217 689*********************************************************998888876554444455555******************* PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLr 195 lea+ege+++Hi+D++ ++++QWp+L++aLa+R++++p+lR+T+v+ +++ ++ ++e+g r++kfA+ +gvpf+fnv++++ +l+++++ eL+ Ahy016226 218 LEALEGETKLHIVDISNTYCTQWPTLFEALATRSDDTPHLRLTTVVVTTAHggsvpaAQRVMKEIGARMEKFARLMGVPFKFNVVHHSgDLSQFDFGELD 317 *********************************************9998889***99999*************************8888*********** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellg 291 ++ +EalaVn+v +lh++ ++ ++rd+v++ +++l+P++v+vve+ead++ + +F+++f e+l+++ + f++le+++pr+s+er ++Er+ g Ahy016226 318 IRDDEALAVNCVNSLHSIA----AVGNRRDAVISSLRRLQPRIVTVVEEEADLDVGlegfEFVKGFQECLRWFRVYFEALEESFPRTSNERLMLERA-AG 412 ******************8....888899*********************99865556679************************************.** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 r+ v++vac+ +e+ er+et+++W++r++ +GF+++++se++ +++++ ++v++ Ahy016226 413 RAMVDLVACSAEESSERRETAARWSQRMHGSGFNTASFSEEVCDDVRAAAEEVQG 467 **********************************************999988874 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.273 | 90 | 475 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-96 | 118 | 467 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 533 aa Download sequence Send to blast |
MDTLFRVVSF EEYQQQQQVE LDQSLNSTTT TTTSSSSRSS RHNYHHYQQQ QQDEECFNFF 60 MDEEDLSSSS SKHHYYPYHS QSHPHTSTPT ATILTPNDFS HSFDFNLQFS SNTKWATDIL 120 LDAARALADK NTARLQHLMW MLNELSSPYG DTEQKLAAYF LQALFSRMTH AGDRTFRTLT 180 SASDKTCSFE STRKTVLKFQ EVSPWTTFGH VAANGAILEA LEGETKLHIV DISNTYCTQW 240 PTLFEALATR SDDTPHLRLT TVVVTTAHGG SVPAAQRVMK EIGARMEKFA RLMGVPFKFN 300 VVHHSGDLSQ FDFGELDIRD DEALAVNCVN SLHSIAAVGN RRDAVISSLR RLQPRIVTVV 360 EEEADLDVGL EGFEFVKGFQ ECLRWFRVYF EALEESFPRT SNERLMLERA AGRAMVDLVA 420 CSAEESSERR ETAARWSQRM HGSGFNTASF SEEVCDDVRA AAEEVQGRVV NGTVLGSRRN 480 DAVVEGAGGG VGQCMEAQLH VVLIDHHSLL LARGFSFLVR FGSVRLRWVG LGG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 0.0 | 77 | 460 | 2 | 382 | Protein SHORT-ROOT |
5b3h_E | 0.0 | 77 | 460 | 2 | 382 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016201630.1 | 0.0 | protein SHORT-ROOT | ||||
Refseq | XP_025652294.1 | 0.0 | protein SHORT-ROOT | ||||
Swissprot | Q9SZF7 | 0.0 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A444ZAM9 | 0.0 | A0A444ZAM9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G40180.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-174 | GRAS family protein |