PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy008934

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 518aa MW: 56364.5 Da PI: 4.9497

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59541404	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.6	2.1e-113	146	518	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++L+ecA +s+ + +a++ L++l++ +s++g+p+qR+ +yf+eAL ++l+ + a+ +++ ++s+e + +k++++++P+ kf+hltaNq Ahy008934 146 LKALTECAL-LSETEPDQASESLSQLRKSVSQNGNPIQRVSFYFAEALTRKLTFeREKDKNLAMVEAASTATTSEELTLCYKALNDACPYSKFAHLTANQ 244 6899**8.67779999******************************983333444445566666677999999***************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 aIlea+eg++r+Hi+Df+i qG+QW+aLlqa+a+R++g+p s+Ri g+ +++ g + +l++tg+rL++fA+ l+++fef++ + + +++l+ +++ v+ Ahy008934 245 AILEATEGASRIHIVDFGIVQGIQWAALLQAFATRSSGKPeSIRISGIPAMALGtsPAASLSATGNRLSEFAKLLELNFEFRP-ILTPIHELNESSFCVD 343 ********************************77776*****99889999*********************.799********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 p+EalaVn++lql++llde+ + + + L+l ksl+Pk+v++ e ea+++++ F++rf +al+yys++f+sle +++++s er+ vEr+l+gr+i+ v Ahy008934 344 PNEALAVNFMLQLYNLLDETPDAVE---AALRLAKSLRPKIVTLGEYEASLTRGGFMNRFKNALRYYSSVFESLEPNMAPDSPERMQVERHLFGRRISGV 440 *************99999998...9******************************************************************* PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 v g+ rer+e +e+Wr +e++GF++v+ls++a +qak ll +++ s y++ e++ +++ l Wkd pL++vS+Wr Ahy008934 441 VGLPGTV-RERMEDKEQWRVFMESCGFESVSLSHYAISQAKILLWNYSySSLYSLVESKPEFLsLAWKDVPLLTVSSWR 518 **9.9***********************************9999**999999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.295	119	496	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.4E-111	146	518	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
XATFDSDEWM DTLMATAAGD STDTSTIPAA AAAWHNGNSD FGLYGSSPFT TCPTRLSPTS 60 DLNRVIFSSE PHTAAVTTTA AATGVSLQQA QLPATWATPP PLPPPTAVKE APKMVASSPP 120 APPQAPATVQ GGFSSLPEPD SSHPLLKALT ECALLSETEP DQASESLSQL RKSVSQNGNP 180 IQRVSFYFAE ALTRKLTFER EKDKNLAMVE AASTATTSEE LTLCYKALND ACPYSKFAHL 240 TANQAILEAT EGASRIHIVD FGIVQGIQWA ALLQAFATRS SGKPESIRIS GIPAMALGTS 300 PAASLSATGN RLSEFAKLLE LNFEFRPILT PIHELNESSF CVDPNEALAV NFMLQLYNLL 360 DETPDAVEAA LRLAKSLRPK IVTLGEYEAS LTRGGFMNRF KNALRYYSSV FESLEPNMAP 420 DSPERMQVER HLFGRRISGV VGLPGTVRER MEDKEQWRVF MESCGFESVS LSHYAISQAK 480 ILLWNYSYSS LYSLVESKPE FLSLAWKDVP LLTVSSWR

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

XATFDSDEWM DTLMATAAGD STDTSTIPAA AAAWHNGNSD FGLYGSSPFT TCPTRLSPTS  60
DLNRVIFSSE PHTAAVTTTA AATGVSLQQA QLPATWATPP PLPPPTAVKE APKMVASSPP  120
APPQAPATVQ GGFSSLPEPD SSHPLLKALT ECALLSETEP DQASESLSQL RKSVSQNGNP  180
IQRVSFYFAE ALTRKLTFER EKDKNLAMVE AASTATTSEE LTLCYKALND ACPYSKFAHL  240
TANQAILEAT EGASRIHIVD FGIVQGIQWA ALLQAFATRS SGKPESIRIS GIPAMALGTS  300
PAASLSATGN RLSEFAKLLE LNFEFRPILT PIHELNESSF CVDPNEALAV NFMLQLYNLL  360
DETPDAVEAA LRLAKSLRPK IVTLGEYEAS LTRGGFMNRF KNALRYYSSV FESLEPNMAP  420
DSPERMQVER HLFGRRISGV VGLPGTVRER MEDKEQWRVF MESCGFESVS LSHYAISQAK  480
ILLWNYSYSS LYSLVESKPE FLSLAWKDVP LLTVSSWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-149	142	518	1	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250\|UniProtKB:Q53K16, ECO:0000250\|UniProtKB:Q9SCR0, ECO:0000269\|PubMed:20616154}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269\|PubMed:20616154}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025642806.1	0.0	SCARECROW-LIKE protein 7
Swissprot	A0A024B7I0	0.0	SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBL	A0A445A792	0.0	A0A445A792_ARAHY; Uncharacterized protein
STRING	cassava4.1_003937m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	1e-165	GRAS family protein