PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Ahy005800 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ERF | ||||||||||||
Protein Properties | Length: 174aa MW: 19587.6 Da PI: 9.1231 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Ahy005800 46 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 95 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.9E-38 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.128 | 46 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 46 | 104 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.07E-27 | 47 | 105 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 47 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-12 | 47 | 58 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 47 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-12 | 85 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEEVKDCCSS NTTATRSRGR RSSSTGSSSE KRKQQQQQQQ QQEEKPYRGI RMRKWGKWVA 60 EIREPNKRSR IWLGSYTTPV AAARAYDTAV FYLRGPSARL NFPELLLQEQ TEAVEGDITA 120 DSIRKRATQV GARVDAALQA SSNSVNSSQT TSEKPDLNKV PKSEETEEDS LDQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 45 | 103 | 4 | 63 | ATERF1 |
3gcc_A | 2e-15 | 45 | 103 | 4 | 63 | ATERF1 |
5wx9_A | 3e-15 | 43 | 104 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025613572.1 | 1e-125 | ethylene-responsive transcription factor RAP2-1 | ||||
Refseq | XP_025613573.1 | 1e-125 | ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q8LC30 | 9e-56 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A444WNN4 | 1e-124 | A0A444WNN4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA14G09320.1 | 1e-67 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 4e-53 | related to AP2 1 |
Publications ? help Back to Top | |||
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