PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy004898
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 218aa    MW: 25023 Da    PI: 9.9479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S54178398PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.8e-1332123198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffkv +++    ++ + l kkf++ +g+    s  l l+ ++g +W+v     +++g++++++GWkeFv    L++g ++ F+++   + +  v++++
  Ahy004898  32 FFKVILRKTLQDEN-FKLLKKFTRIYGSG--LSNPLYLKPPDGTEWRVDW--INQDGGILFKQGWKEFVAYYSLDDGYVLWFEYNI-GTSHIEVQICD 123
                66777666555555.9*******999755..6667***************..9******************************973.44555888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1626125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1626125IPR015300DNA-binding pseudobarrel domain
CDDcd100173.67E-1131123No hitNo description
PROSITE profilePS5086310.17931125IPR003340B3 DNA binding domain
PfamPF023623.5E-1032123IPR003340B3 DNA binding domain
SMARTSM010191.5E-832125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
NNSQIHSSSI AMVPSNCQQN KHSPSNSTVI RFFKVILRKT LQDENFKLLK KFTRIYGSGL  60
SNPLYLKPPD GTEWRVDWIN QDGGILFKQG WKEFVAYYSL DDGYVLWFEY NIGTSHIEVQ  120
ICDMSGLQIK YPVNDQIKEH PPQHRGHPVK RPKEQQTIDV DNSPSTQNMR LNEGRQEKRL  180
NEPMSGVGGQ SRKKLRAPVS SASKGRQLES DTXNQRKC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179783.11e-145B3 domain-containing transcription factor VRN1-like isoform X3
RefseqXP_025683790.11e-145B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A444X9W41e-144A0A444X9W4_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-16B3 family protein