PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy003979
Common NameMYB6
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 275aa    MW: 31341 Da    PI: 5.4395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S54189979PU_unrefUnigeneView CDS
gnl|UG|Ahy#S59557407PU_unrefUnigeneView CDS
PUT-171a-Arachis_hypogaea-6956PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
        Ahy003979 14 KGPWTAEEDQILISYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.21.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
        Ahy003979  67 RGNFTIEEEETIIKLHEMLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.143961IPR017930Myb domain
SuperFamilySSF466894.3E-3210108IPR009057Homeodomain-like
SMARTSM007174.2E-151363IPR001005SANT/Myb domain
PfamPF002494.7E-171461IPR001005SANT/Myb domain
CDDcd001672.67E-111661No hitNo description
PROSITE profilePS5129425.73962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2665117IPR009057Homeodomain-like
SMARTSM007171.5E-1366114IPR001005SANT/Myb domain
PfamPF002493.8E-1567112IPR001005SANT/Myb domain
CDDcd001672.18E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTAE EDQILISYIQ KHGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TIEEEETIIK LHEMLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLIKPN  120
QMNSSSSDTK RVSNKSKIKR SDSNSSTITV QSSEPASLNS NFPEMDTTSA SCTTTTTTTS  180
SEFSSATNTG ERKNMNMMNI KNEELEDSLE NIIDESLWTE AGIDDETTNM TISNNELPSL  240
QYYDPVFNNS EENLSFQPST NFEDDGMDFW YDILH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
1h8a_C4e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015940663.10.0myb-related protein Myb4
RefseqXP_025619598.10.0transcription factor MYB4
SwissprotQ9LTC41e-81MYB15_ARATH; Transcription factor MYB15
TrEMBLV5T6N90.0V5T6N9_ARAHY; Putative R2R3 MYB protein 6
STRINGGLYMA20G35180.11e-119(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-79myb domain protein 15
Publications ? help Back to Top
  1. Chen N, et al.
    Identification of 30 MYB transcription factor genes and analysis of their expression during abiotic stress in peanut (Arachis hypogaea L.).
    Gene, 2014. 533(1): p. 332-45
    [PMID:24013078]
  2. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  5. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  6. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  7. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]