PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy001329
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 274aa    MW: 31847.7 Da    PI: 9.7832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S54113175PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-16573PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.6e-11461241297
                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                 +  + lp + +e++g++   s  l l+ ++g +W+v+   +++ g++++++GWkeFv    L+ g  + F+   +  + +++v +f
  Ahy001329  46 DE-DFKLPIS-TEKYGSD--LSNPLYLKPPDGTEWRVEW--TNHNGEILFKNGWKEFVAYYSLDHGHLLWFE--CNiGTSHMKVNIF 124
                33.3777766.5799877..6667***************..*******************************..4556666788777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1528128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1433134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.95334127IPR003340B3 DNA binding domain
CDDcd100178.70E-934124No hitNo description
SMARTSM010190.008735127IPR003340B3 DNA binding domain
PfamPF023627.1E-849124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
XSFTIVKFIH HLFVIASSNR QQNNHSPSTS TVICFFKIVL RQALQDEDFK LPISTEKYGS  60
DLSNPLYLKP PDGTEWRVEW TNHNGEILFK NGWKEFVAYY SLDHGHLLWF ECNIGTSHMK  120
VNIFGMNCLQ IEYPANDQIK EQLTGRGQQP MKKQEEQKTR DMDNSRNTQN MRLNEGPQKK  180
RLNESLPREV WDQPRKKLRA LVSSGSKDRH LENDTQIKDV ERSFNSHGIK SKEKNHEMPV  240
SVNQNSNGKK NRRKKDYESP GMPCPTRLGS LKEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946908.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A444X8K61e-133A0A444X8K6_ARAHY; Uncharacterized protein
TrEMBLA0A444X8L01e-133A0A444X8L0_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-14B3 family protein