PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022692-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 269aa    MW: 31704.6 Da    PI: 8.2263
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022692-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.28.8e-1649127290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fYn+ Ak+ GF vrk++s ++  +g++++r+f+C + gk+  +  + ++++r+++++r++Cka++        +w+vtk+++eHnHe+ 
  AHYPO_022692-RA  49 FYNNNAKRHGFVVRKDRSDTK--QGKTVRRDFYCHRAGKNPMKVIDLSESQRNKESSRCECKAHM--------QWHVTKFSKEHNHEML 127
                      9***************99988..8889*******************9****************99........5*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1349128IPR004330FAR1 DNA binding domain
PfamPF105512.3E-9210254IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAVNNLYTIT DITMLDFDLN DPLIEDEKIN DDEPFIDLTF KTQEEAFIFY NNNAKRHGFV  60
VRKDRSDTKQ GKTVRRDFYC HRAGKNPMKV IDLSESQRNK ESSRCECKAH MQWHVTKFSK  120
EHNHEMLPLE AMRFLPVNRN IDPEDEKQIL LLKEAGLKVR QIIRVLELQI NAKHKELPFI  180
ERDVRNLFGK MKRFFVADDV TSLLEYMKLK NTFVSIMKNP PKTIITDQDP WMSRAIATEM  240
PTTKHSYCIW HITSKFSSWF VALLREDC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021756202.11e-94subtilisin-like protease SBT5.4
RefseqXP_021757665.12e-96protein FAR1-RELATED SEQUENCE 11-like isoform X1
RefseqXP_021757666.11e-97protein FAR1-RELATED SEQUENCE 11-like isoform X2
RefseqXP_021757667.11e-97protein FAR1-RELATED SEQUENCE 11-like isoform X2
TrEMBLA0A2U1M8442e-84A0A2U1M844_ARTAN; Protein FAR1-RELATED SEQUENCE 11
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.14e-40FAR1-related sequence 11