PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022132-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 229aa    MW: 24600.1 Da    PI: 6.7557
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022132-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.42.1e-37131131100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA  r+rdP+yG+v++i++lqqq+ +++ae
  AHYPO_022132-RA  13 PCGACKYLRRKCIEGCVFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHRRLDAVVTLCYEALSRVRDPIYGCVSHIFTLQQQVINMQAE 106
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      la ++++
  AHYPO_022132-RA 107 LAFVQSR 113
                      **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.55512114IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3613111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGGGGGGGGG GGPCGACKYL RRKCIEGCVF APYFDSDQGT AHFAAVHKVF GASNASKLLL  60
RIPAHRRLDA VVTLCYEALS RVRDPIYGCV SHIFTLQQQV INMQAELAFV QSRLASLRRL  120
PPTFSTMDHT PNSCCIDQLS VATTTTSTAP IPMPTFDSNF PLHSVSSSQS LLAAEVPNMT  180
AAELPSFCNL TDTYQQDDMI FEDGDLQTLT REFVSKFLPG VKLKSEPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3791147111LOB family transfactor Ramosa2.1
5ly0_B6e-3791147111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858931.11e-111LOB domain-containing protein 31-like
SwissprotO813223e-68LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0K9QWU81e-110A0A0K9QWU8_SPIOL; Uncharacterized protein
STRINGXP_010692268.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-68LOB domain-containing protein 31