PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021958-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 521aa MW: 55697.1 Da PI: 8.759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021958-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H AHYPO_021958-RA 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	11.8	0.00075	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + AHYPO_021958-RA 145 WKCEKCSKKYAVQSDWKAHSKIC 167 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.78E-7	68	91	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	68	91	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.4E-5	69	91	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	69	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	69	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	110	140	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.7E-4	133	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.78E-7	140	165	No hit	No description
SMART	SM00355	140	145	165	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MPADIDDSSP KTMSNSTGQT GDASVSSNGD QFEPLKPPLK KKRNQPGMPD PDAEVIALSP 60 KALMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEIKKRVY VCPEPSCVHH 120 DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTK EYKCDCGTLF 180 SRRDSFITHR AFCDALAVES VRNHPNPNPN PNPNPNNGSN NNNNNKMELE SKASIAIASS 240 PSTTPSSPPL VPLPSPKQSP PPATLPLPPP APVTQSTTMV SSNMPCMFLI VKKKTLLFTK 300 ETIFLFNLLL FYSLQAVPEN PSPISDDPVL PVAIATTGLN GSCSSSSSCS PSGVPGANTS 360 SSVFATLFSS SSTAPPSLPS HPNPGFSDLN QTMARSECQP PEFAPSASTE PISLCLATNH 420 GSSIFGHAGH ERRQYAPPPQ PAMSATALLQ KAAQIGSANG GSLLRGLGLV TSTLSSVSSE 480 NLQWGSRQVE PETNPVPSGL GLGLPCDEGS GLKELMIGSS S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MPADIDDSSP KTMSNSTGQT GDASVSSNGD QFEPLKPPLK KKRNQPGMPD PDAEVIALSP  60
KALMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEIKKRVY VCPEPSCVHH  120
DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTK EYKCDCGTLF  180
SRRDSFITHR AFCDALAVES VRNHPNPNPN PNPNPNNGSN NNNNNKMELE SKASIAIASS  240
PSTTPSSPPL VPLPSPKQSP PPATLPLPPP APVTQSTTMV SSNMPCMFLI VKKKTLLFTK  300
ETIFLFNLLL FYSLQAVPEN PSPISDDPVL PVAIATTGLN GSCSSSSSCS PSGVPGANTS  360
SSVFATLFSS SSTAPPSLPS HPNPGFSDLN QTMARSECQP PEFAPSASTE PISLCLATNH  420
GSSIFGHAGH ERRQYAPPPQ PAMSATALLQ KAAQIGSANG GSLLRGLGLV TSTLSSVSSE  480
NLQWGSRQVE PETNPVPSGL GLGLPCDEGS GLKELMIGSS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	141	210	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-33	141	210	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148484	4e-96	AC148484.17 Medicago truncatula chromosome 8 clone mth2-46g10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021718487.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-150	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0K9QGD0	0.0	A0A0K9QGD0_SPIOL; Uncharacterized protein
STRING	XP_010680830.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-107	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	AHYPO_021958-RA

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]