PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021729-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 313aa    MW: 34952 Da    PI: 5.6061
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021729-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-183277148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l
  AHYPO_021729-RA 32 RGKFTPEEEQTILNLHAILGNK-WSAIANHLP-GRTDNEIKNFWNTHL 77
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-5527IPR009057Homeodomain-like
PROSITE profilePS500904.414926IPR017877Myb-like domain
SuperFamilySSF466891.58E-162687IPR009057Homeodomain-like
PROSITE profilePS5129427.7762781IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-262882IPR009057Homeodomain-like
SMARTSM007171.2E-173179IPR001005SANT/Myb domain
PfamPF002491.7E-173277IPR001005SANT/Myb domain
CDDcd001677.83E-143477No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRSPCCDET GLKKGPWTPE EDEKLVKPDI KRGKFTPEEE QTILNLHAIL GNKWSAIANH  60
LPGRTDNEIK NFWNTHLKKK LIQMGFDPMT HRPRTDIFSS LPHLIALANI KDLIENNSWD  120
EQAVRLQTEV AKLQFLQHLF QPPNNYSMPN LDMESLNILN SLPSPFSTEH NNHNHNHNNN  180
HNNPITNIPG LDNPNVFEDI HEHLPDLKTL EIPPNLISKD NNINTSISVV NHDQVVYNHQ  240
PCEYTILSLG ENSPTSPWIS SSTPSPPPVN ASGSAATSAP PIDGCINTSA TASSFSWPDH  300
LILEDSLFHD IP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1412815108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714183.11e-139transcription factor MYB16-like
SwissprotQ9SBF31e-72MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A068TZV33e-93A0A068TZV3_COFCA; Uncharacterized protein
STRINGXP_010680536.11e-129(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.18e-68myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]