PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021629-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

HD-ZIP

Protein Properties

Length: 795aa MW: 88137.9 Da PI: 6.0626

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021629-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	5.9e-20	118	173	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k AHYPO_021629-RA 118 KKRYHRHTIRQIQEMEALFRECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 173 6888999**********************************************998 PP
2	START	144.2	1.3e-45	322	557	2	206
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS....................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...................dsgealrasgvvdmvlallveellddkeqWdetl 76 la + ++el+k+ +ep+W +n ++vl ++e s+ ++ea r++++v+m++ +lv +lld +W e + AHYPO_021629-RA 322 LAMSSMDELLKLCHTNEPLWIPNC--SNTMDVLNIEEYSRMftnwpphhngdplkphysaLRTEATRDKALVIMNSINLVDSLLDAD-KWVELF 412 677899************9999..777777777777666777778888*********************************.** PP S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEE CS START 77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpSgiliep 156 + +a+t++ + sg g l+lm+aelq+lsplvp R+ +f+Ry+ ++g wv+vd vds q + + ++ R +++pSg++i++ AHYPO_021629-RA 413 PsivsRAKTIQILASGvsghasGSLHLMYAELQVLSPLVPtRETYFLRYCHHnAEDGMWVVVDFPVDSFQGAFQlsQNNIPRYRRRPSGCIIQD 506 ************************************************9***********99988888999*********** PP ECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 157 ksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++ng+skvtw+eh++ g p h++++ v + +a+gak+w+a lqrqce+ AHYPO_021629-RA 507 MPNGYSKVTWIEHTEILGEKPiHQIFNLYVDNMMAFGAKRWLAVLQRQCER 557 ***********9999999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-20	104	176	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-21	112	180	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	115	175	IPR001356	Homeobox domain
SMART	SM00389	5.2E-18	116	179	IPR001356	Homeobox domain
CDD	cd00086	1.95E-18	118	176	No hit	No description
Pfam	PF00046	2.1E-17	118	173	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	150	173	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.348	312	560	IPR002913	START domain
SuperFamily	SSF55961	4.67E-30	313	559	No hit	No description
CDD	cd08875	9.47E-108	316	556	No hit	No description
SMART	SM00234	5.2E-30	321	557	IPR002913	START domain
Pfam	PF01852	1.7E-38	322	557	IPR002913	START domain
SuperFamily	SSF55961	2.56E-5	577	765	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MYGDCQVALP STMGGAGENG IPSTPDCSSL IFSSPMRNPN NNHLNSFSFM SSLPPTFHPF 60 SSIMPVKEEI RGKEEMMESL SGSELNMEGQ GGVSGNELDS ISGDLLNQNQ SQPPGSKKKR 120 YHRHTIRQIQ EMEALFRECP HPDDKQRMKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRTD 180 NVILRAENDN LKNENYRLQA VLRSLICPGC GGSSILGEVE YDEHQLHIEN ARLKEELDRV 240 CAVASRYTGR SLQTLGPPAT LLQAPPSLDL DMGIYSRHFQ DSIPPCTQLL AMPLLPSDYP 300 NGGGNTGRGL IMDEERPLAM ELAMSSMDEL LKLCHTNEPL WIPNCSNTMD VLNIEEYSRM 360 FTNWPPHHNG DPLKPHYSAL RTEATRDKAL VIMNSINLVD SLLDADKWVE LFPSIVSRAK 420 TIQILASGVS GHASGSLHLM YAELQVLSPL VPTRETYFLR YCHHNAEDGM WVVVDFPVDS 480 FQGAFQLSQN NIPRYRRRPS GCIIQDMPNG YSKVTWIEHT EILGEKPIHQ IFNLYVDNMM 540 AFGAKRWLAV LQRQCERVAS LMARNVSDHG VIQSAEARKN FMKLAQRMIR TLCVNISTSG 600 GQSWTALSEN AEDTVRITTR KIMEPGQPNG LILCAVTTTW LPYSHEQMAS NSSQNVELML 660 QESCTDASGS LVVYSTLEVD YIQLVMSGED PSCIPLLPTG FSIIPLERTT STPDANDSDT 720 NNHHTTAGCL LTVGIQVHAS AIPNAKLNLS SVNAINSHIC SVVHQINVVL GNTNGSSNTN 780 NNNINACVAA TSND*

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MYGDCQVALP STMGGAGENG IPSTPDCSSL IFSSPMRNPN NNHLNSFSFM SSLPPTFHPF  60
SSIMPVKEEI RGKEEMMESL SGSELNMEGQ GGVSGNELDS ISGDLLNQNQ SQPPGSKKKR  120
YHRHTIRQIQ EMEALFRECP HPDDKQRMKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRTD  180
NVILRAENDN LKNENYRLQA VLRSLICPGC GGSSILGEVE YDEHQLHIEN ARLKEELDRV  240
CAVASRYTGR SLQTLGPPAT LLQAPPSLDL DMGIYSRHFQ DSIPPCTQLL AMPLLPSDYP  300
NGGGNTGRGL IMDEERPLAM ELAMSSMDEL LKLCHTNEPL WIPNCSNTMD VLNIEEYSRM  360
FTNWPPHHNG DPLKPHYSAL RTEATRDKAL VIMNSINLVD SLLDADKWVE LFPSIVSRAK  420
TIQILASGVS GHASGSLHLM YAELQVLSPL VPTRETYFLR YCHHNAEDGM WVVVDFPVDS  480
FQGAFQLSQN NIPRYRRRPS GCIIQDMPNG YSKVTWIEHT EILGEKPIHQ IFNLYVDNMM  540
AFGAKRWLAV LQRQCERVAS LMARNVSDHG VIQSAEARKN FMKLAQRMIR TLCVNISTSG  600
GQSWTALSEN AEDTVRITTR KIMEPGQPNG LILCAVTTTW LPYSHEQMAS NSSQNVELML  660
QESCTDASGS LVVYSTLEVD YIQLVMSGED PSCIPLLPTG FSIIPLERTT STPDANDSDT  720
NNHHTTAGCL LTVGIQVHAS AIPNAKLNLS SVNAINSHIC SVVHQINVVL GNTNGSSNTN  780
NNNINACVAA TSND*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677364.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A0K9RGC1	0.0	A0A0K9RGC1_SPIOL; Uncharacterized protein
STRING	XP_010677364.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Link Out ? help Back to Top
Phytozome	AHYPO_021629-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]