PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_021568-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C3H

Protein Properties

Length: 397aa MW: 44242.9 Da PI: 7.6868

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_021568-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.2	5.2e-07	175	195	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ fa+ GtC++Gd+C+ +Hg AHYPO_021568-RA 175 ICS-FAAAGTCPRGDKCPHIHG 195 577.**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	7.977	66	95	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	42	67	94	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.793	170	197	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0017	171	196	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	176	195	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	1.72E-13	227	302	No hit	No description
Gene3D	G3DSA:3.30.40.10	4.7E-10	232	297	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	5.67E-5	238	297	No hit	No description
PROSITE profile	PS50089	12.179	239	296	IPR001841	Zinc finger, RING-type
SMART	SM00184	3.1E-7	239	295	IPR001841	Zinc finger, RING-type
Pfam	PF00097	3.8E-7	239	295	IPR018957	Zinc finger, C3HC4 RING-type
PROSITE pattern	PS00518	0	262	271	IPR017907	Zinc finger, RING-type, conserved site
PROSITE profile	PS50103	14.314	325	354	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0078	325	353	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
QRHFTKLTRF FSFVFYQINS HFSASPLHFL TFIQSSFKTL TTEPDAASHL HSSPSGDDST 60 QAVTERPTEP AAASHQNHRG ACAYGSRCRY DHLKISKVQS SGSSSSINFS ETKTPGVTIS 120 GIATGSSVQP ELSPVSRECL LSSKAAWNQQ PGNPGYVEDD FVPHPRSDRL ADQIICSFAA 180 AGTCPRGDKC PHIHGDLCPT CGKHCLHPYR LKEREEHSQT CEKMQKHLEA LKQSQEIECS 240 VCLERVLTKP VGERKFGLLS ECDHPFCISC IRGWRNSSPS SGMDVNSTLR ACPICRKLSY 300 FVIPSVIWYF SNEEKEEIVE SYKAKLKSID CKYFEFGNGS CPFGTSCFYK HSYRDGSVEE 360 VVLRHLGAAD GETACRLPQK FAYKLNLDWF ACILYT*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

QRHFTKLTRF FSFVFYQINS HFSASPLHFL TFIQSSFKTL TTEPDAASHL HSSPSGDDST  60
QAVTERPTEP AAASHQNHRG ACAYGSRCRY DHLKISKVQS SGSSSSINFS ETKTPGVTIS  120
GIATGSSVQP ELSPVSRECL LSSKAAWNQQ PGNPGYVEDD FVPHPRSDRL ADQIICSFAA  180
AGTCPRGDKC PHIHGDLCPT CGKHCLHPYR LKEREEHSQT CEKMQKHLEA LKQSQEIECS  240
VCLERVLTKP VGERKFGLLS ECDHPFCISC IRGWRNSSPS SGMDVNSTLR ACPICRKLSY  300
FVIPSVIWYF SNEEKEEIVE SYKAKLKSID CKYFEFGNGS CPFGTSCFYK HSYRDGSVEE  360
VVLRHLGAAD GETACRLPQK FAYKLNLDWF ACILYT*

Functional Description ? help Back to Top
Source	Description
UniProt	E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695330.1	1e-175	PREDICTED: E3 ubiquitin-protein ligase makorin
Swissprot	Q5ZA07	1e-119	C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBL	A0A0K9QYM6	1e-169	A0A0K9QYM6_SPIOL; Uncharacterized protein
STRING	XP_010695330.1	1e-174	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	1e-118	C3H family protein

Link Out ? help Back to Top
Phytozome	AHYPO_021568-RA

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sahi VP, et al. A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo. Plant Signal Behav, 2012. 7(3): p. 375-81 [PMID:22499205] Wadekar HB,Sahi VP,Morita EH,Abe S MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare). Planta, 2013. 237(4): p. 1083-95 [PMID:23262670]