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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | AHYPO_021519-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 289aa MW: 35142.6 Da PI: 9.1774 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 40.9 | 6.8e-13 | 2 | 66 | 31 | 91 |
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHelap 91
r+f C +e +++ + +k +r+r++tr+ Cka +++ +++ +++w++t++ +eHnH+l p
AHYPO_021519-RA 2 RDFFCHRESPEKKLYDP-SKYQRKRESTRCACKAIMRIMLQNsfdifQEQWHITQFISEHNHSLLP 66
79******999988877.9999****************9998788889***************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 4.4E-10 | 1 | 66 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 289 aa Download sequence Send to blast |
RRDFFCHRES PEKKLYDPSK YQRKRESTRC ACKAIMRIML QNSFDIFQEQ WHITQFISEH 60 NHSLLPPELV RFLPSYRTIS KEDNQHILLL KEVGLPVRQI ISVIELEKKV RHGRIPFLRK 120 DIYHLFQKIR KNHAEEDAKD LIEYFKLYKL ENIEDFEREC HLLLTKFNLK DNKHVIGLYE 180 IKRFWVPAYL RGYFLLRYLS NLCVFYVNLA IENIEQTQMH HTMLDTYRGS SLRTLSPLEN 240 QVSKVFTKYD FQKIQLQFEM ATQYKICEEN RNIITMQYYD KTNSQSPWD |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024630748.1 | 3e-87 | protein FAR1-RELATED SEQUENCE 11-like | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G10240.1 | 2e-29 | FAR1-related sequence 11 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | AHYPO_021519-RA |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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