PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021403-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 198aa    MW: 22263.9 Da    PI: 4.2385
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021403-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.11.5e-141264354
              NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkae 54
                     pGfrFhPt+eel+++yLk+ v+g+k++  ++i  ++iy+++P+dLp+  ++k+e
  AHYPO_021403-RA 12 PGFRFHPTEEELLDFYLKNMVNGRKMHH-DIIGFLNIYRFDPSDLPElrAAKEE 64
                     9************************999.99**************943222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.59410174IPR003441NAC domain
SuperFamilySSF1019415.75E-151163IPR003441NAC domain
PfamPF023651.0E-61260IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDNSSSPNFE LPGFRFHPTE EELLDFYLKN MVNGRKMHHD IIGFLNIYRF DPSDLPELRA  60
AKEEEKSTNA SYPTSPLSSS NETQSFIDNN SQLQDFFPPI STNNMIFPTL KKEENYVEPT  120
NFNNNIIIMP PTITSNTIQT PFGKENLQLQ VPNSGMSTGT GTGMEWAQDP LFSLSCTSPW  180
LENLLNLSSP SLISQIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848488.12e-39NAC domain-containing protein 35
TrEMBLA0A0K9QXX35e-38A0A0K9QXX3_SPIOL; Uncharacterized protein
STRINGXP_010690266.11e-33(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-22NAC domain containing protein 36