PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021203-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 242aa    MW: 27265.9 Da    PI: 4.9634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021203-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-1390142155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++r+h e+Er+RR+++ + ++ Lr+ +P       ++K s ++ + +A +YIk+L+
  AHYPO_021203-RA  90 QKRKHREVERQRRQEMSDLYSALRSQIPDqY---IQGKRSTSDHVAEAANYIKDLE 142
                      6889*************************66...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.00E-1487146No hitNo description
SuperFamilySSF474594.45E-1588161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.62789141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-1190142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1191157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-495147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MFPFKNSGNL SFQNPNYVEE EEENMVENQI NWADIGSEGL ESMNTSLNNR EISRRGRGRG  60
RGQGRGRRQN SSFDPNNESG PSNYCDDEEQ KRKHREVERQ RRQEMSDLYS ALRSQIPDQY  120
IQGKRSTSDH VAEAANYIKD LEKNIKELSI RRDELKATPE WRNPTYEVGG SSSNPNARPG  180
SVVINPCLGG IAINIDVGYE DQTFSLSSAL QVLFEEGLSV SSCTSTKIND RIVHDIICEV  240
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15665RGRGRGQGRG
290101KRKHREVERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693676.18e-82PREDICTED: uncharacterized protein LOC104906600
RefseqXP_021730483.12e-83transcription factor bHLH118-like
TrEMBLA0A0J8BG107e-83A0A0J8BG10_BETVU; Uncharacterized protein
STRINGXP_010693676.13e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-34bHLH family protein