PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_021125-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 677aa    MW: 77394.9 Da    PI: 9.9726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_021125-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-092961235
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgR 35
                     + W   E++llv+av+++G+++W++Ia++++ +R
  AHYPO_021125-RA 29 QTWGVLEELLLVCAVNRHGTDSWDSIANELQ-KR 61
                     679999************************9.66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.4E-52797IPR001005SANT/Myb domain
PfamPF002493.7E-82962IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-42964IPR009057Homeodomain-like
CDDcd001674.18E-43061No hitNo description
SMARTSM002977.3E-19311420IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.7E-19313435IPR001487Bromodomain
SuperFamilySSF473701.57E-20314429IPR001487Bromodomain
CDDcd043691.06E-17322415No hitNo description
PfamPF004395.7E-12326404IPR001487Bromodomain
PROSITE profilePS5001413.023330401IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MNEKEKYDET TSSNNENLRT KMPENEGEQT WGVLEELLLV CAVNRHGTDS WDSIANELQK  60
RIKHSSSHNE DEYEKFDVKS GFSSKNCEEK YVHLKRRFHD DEDDDDGVLR MVEELRKLRV  120
EELKREVHRH DVSIVSLQSK VKRLMEERDN SKVKEEQADL TIEPVENIRE KLEEFERSSQ  180
EKVITGDSAE NRSWNESNST SHHHHHHDVK TDTTQAVTEE RESKLKRESD EPDPVQLEKK  240
SFREWKVSRL TESLSESRRG LSESRRGESL KQQSSDVQSC ASLSKKKRRR FGRGGGDNST  300
DEFEAEELSP ANKRINAKSQ PLIRFLEILR SHKHGSVFQR RIPSQETEKY RNVIRQHMDL  360
DTVQSRLDKG IYSDCHPKFY RDLLLIFTNA VLFYRKSSAE HLAARELRRF VIDEITRKNP  420
KPKIQPRKPD PDPQQLEPIV KKPRSTTMVV CRRRISGSIQ ALSDSLKKGD SNNVTNTSTN  480
NFSKSNSSSK LENNGREEKI MHDNVQKKSN NNGDNGDVDR NLKKSNLVNG GLRLSNNNDK  540
KIISKNLRDQ KQEKNSSSSL LKKQGVANFL KRMKQNSPVS QEKMKNNEEE DEEEKNGGNG  600
NGKKTNGSGS GTHRRNVKEE VEVCVTRRRS SGRKGEKDST DEASRRAIGR PPKRKAAMGS  660
GGITVTSKGG RSGGAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673541.10.0PREDICTED: bromodomain-containing protein DDB_G0280777
TrEMBLA0A0K9S0C20.0A0A0K9S0C2_SPIOL; Uncharacterized protein
STRINGXP_010673541.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.19e-39DNA-binding bromodomain-containing protein