PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_020884-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 152aa MW: 17928.3 Da PI: 9.091 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.5 | 1.2e-09 | 36 | 77 | 2 | 45 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 fYn+YAk+ GF vrk++s ++ +g++++r+f+C + gk+ + AHYPO_020884-RA 36 FYNNYAKRHGFVVRKDRSDTK--QGRTVRRDFYCHRAGKKPMKA 77 9***************99988..8889************97765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-7 | 36 | 78 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MLDFDLNDPL IEDEKMSDDE SFIGQTFETQ EEAFIFYNNY AKRHGFVVRK DRSDTKQGRT 60 VRRDFYCHRA GKKPMKAHMR ITLKRNYDIF PEEWHVTKFS KEHNHEMLPL EAMRFLPINR 120 NIDPKDEKQI IAKGSWSKGS PNNSSLGAAK KC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021756202.1 | 4e-61 | subtilisin-like protease SBT5.4 | ||||
Refseq | XP_021757665.1 | 4e-63 | protein FAR1-RELATED SEQUENCE 11-like isoform X1 | ||||
Refseq | XP_021757666.1 | 1e-63 | protein FAR1-RELATED SEQUENCE 11-like isoform X2 | ||||
Refseq | XP_021757667.1 | 1e-63 | protein FAR1-RELATED SEQUENCE 11-like isoform X2 | ||||
TrEMBL | A0A2U1M844 | 1e-43 | A0A2U1M844_ARTAN; Protein FAR1-RELATED SEQUENCE 11 | ||||
STRING | XP_010689388.1 | 8e-37 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-21 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_020884-RA |