PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020797-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 517aa    MW: 57382.6 Da    PI: 7.2835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020797-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-062748427
                     ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                     ++C+f+++ G C++ + C+FaH++
  AHYPO_020797-RA 27 PICKFWLA-GDCRR-NPCRFAHPK 48
                     89******.*****.99*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.6E-42348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.842349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.446187214IPR000571Zinc finger, CCCH-type
SMARTSM003560.054187213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4191209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.106.5E-22210349IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.9E-6218257IPR001680WD40 repeat
SuperFamilySSF509783.2E-50219513IPR017986WD40-repeat-containing domain
PfamPF004007.2E-6222257IPR001680WD40 repeat
PROSITE profilePS5008214.953225266IPR001680WD40 repeat
PROSITE profilePS5029423.176225477IPR017986WD40-repeat-containing domain
PROSITE patternPS006780244258IPR019775WD40 repeat, conserved site
PRINTSPR003202.1E-7244258IPR020472G-protein beta WD-40 repeat
SMARTSM0032051297334IPR001680WD40 repeat
SMARTSM003209.3E-6341381IPR001680WD40 repeat
PROSITE profilePS5008212.948348390IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.9E-28350512IPR015943WD40/YVTN repeat-like-containing domain
PfamPF117151.5E-5353393No hitNo description
PROSITE patternPS006780368382IPR019775WD40 repeat, conserved site
PRINTSPR003202.1E-7368382IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0015384421IPR001680WD40 repeat
PROSITE profilePS500828.503391420IPR001680WD40 repeat
SMARTSM003200.46425468IPR001680WD40 repeat
PfamPF004000.2438468IPR001680WD40 repeat
PRINTSPR003202.1E-7455469IPR020472G-protein beta WD-40 repeat
SMARTSM0032016474508IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MPQIIPGVSK MQSGRSFSRG RQSANVPICK FWLAGDCRRN PCRFAHPKID APVNSDLRLN  60
QMRFKQCHIR QSLLKANMKE VKNKAIDNCV KSRVIRLNRS VFKRSDTLQR QLKADIRVEH  120
EDGIELKSKK KEPSENKVEE NENGNELKRM QKLPSENKVE ECVPVEKRNN VSSSDVCNAV  180
TENIQMSKGI KVCEQWIKKS CHFGEHCKFL HSWSYGDGFS MLAQLEGHSE AVTGITLPSG  240
SDKLFSGSKD GTIRVWNCHS GECIAVADMG APVECLISEG SWVFVGSTDV VKVLNIETNA  300
EFILSAPGGQ VYAMVVANGM LLVGVHDGSI LAWKLNHETT SFEFVATLKG HTGAVISLIG  360
GVTFKNMLCS GSADNTIRVW DLDTMQCIYS LDKHSEVVMS LQLWEEYLFS CSLDKTLKIW  420
ASAEAGVPEV TYERNEEHGI LSMCVMHDST NKPMLLSSCD DNTVRLYDLP TFAERGRIFA  480
MQEVRSIHVG PGGLFFTGDG TGLVSVWRCS SDQVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v4b_B7e-21210471141391F-box/WD repeat-containing protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107736.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ21e-128C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A067F1Z01e-138A0A067F1Z0_CITSI; Uncharacterized protein
TrEMBLA0A2H5NM581e-138A0A2H5NM58_CITUN; Uncharacterized protein
STRINGXP_010692356.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-121C3H family protein