PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020702-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 407aa    MW: 45360.4 Da    PI: 8.4559
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020702-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.94.2e-49211471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      + pGfrF+Ptdeel+ +yLkkk++g +  + evi+e+di+++ePwdLp k++ ++++ew+fFs+r kky++g++++rat+ gyWkatgk+++v+
  AHYPO_020702-RA  21 MFPGFRFSPTDEELILYYLKKKLDGYDKCV-EVIAELDICRYEPWDLPsKAIIKSDQEWFFFSPRGKKYPNGSQSKRATEIGYWKATGKERAVK 113
                      579***********************9777.99***************767777899************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s +++ +g+k+tLvf+ grapkge+t+W+mhey +
  AHYPO_020702-RA 114 S-GSNIIGTKRTLVFHIGRAPKGERTEWIMHEYCV 147
                      9.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5516163IPR003441NAC domain
PROSITE profilePS5100553.46321163IPR003441NAC domain
PfamPF023657.6E-2523146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDGLGNGISK EAERSITASS MFPGFRFSPT DEELILYYLK KKLDGYDKCV EVIAELDICR  60
YEPWDLPSKA IIKSDQEWFF FSPRGKKYPN GSQSKRATEI GYWKATGKER AVKSGSNIIG  120
TKRTLVFHIG RAPKGERTEW IMHEYCVSGK GQDALVVCRL RRKCDYHAVD GANGRDTQSQ  180
SLDPSVLMAS SGTYSGCDGE LNNRMYPTRD KMAECSANRS SSSHDSHSVE KIDTSSQSDL  240
KAKDETVLQP DQPTSHHVAN ESEDDLFAEI LKDNIVQLDE CLPPSSSTVG VQPVTVTNTS  300
SEPINVMPLL NRNPPHHQSV GPRVHPSQGA ANRRIRLKKL KISPRTEELE EGFGEIIVGS  360
SKLKKFSNDS YQRRGWMRLL KNRCRLYVVL ISVALVILIV AYAQLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-461616312165NO APICAL MERISTEM PROTEIN
1ut4_B3e-461616312165NO APICAL MERISTEM PROTEIN
1ut7_A3e-461616312165NO APICAL MERISTEM PROTEIN
1ut7_B3e-461616312165NO APICAL MERISTEM PROTEIN
3swm_A4e-461616315168NAC domain-containing protein 19
3swm_B4e-461616315168NAC domain-containing protein 19
3swm_C4e-461616315168NAC domain-containing protein 19
3swm_D4e-461616315168NAC domain-containing protein 19
3swp_A4e-461616315168NAC domain-containing protein 19
3swp_B4e-461616315168NAC domain-containing protein 19
3swp_C4e-461616315168NAC domain-containing protein 19
3swp_D4e-461616315168NAC domain-containing protein 19
4dul_A3e-461616312165NAC domain-containing protein 19
4dul_B3e-461616312165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859686.11e-178NAC domain-containing protein 89-like
TrEMBLA0A0K9RI701e-176A0A0K9RI70_SPIOL; Uncharacterized protein
STRINGXP_010692710.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.16e-74NAC domain containing protein 89