PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020681-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YC
Protein Properties Length: 147aa    MW: 16437.9 Da    PI: 8.9891
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020681-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.86.5e-1516942097
            NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                     ++P+ r+kki+k d+++++is+ea  l+s a elf+  l   s   a e+kr+t+k   +  av+r + + dfl+d  p
  AHYPO_020681-RA 16 SIPVGRVKKIVKIDKEITRISSEALFLISGATELFLRFLGEESAKIAAEKKRKTIKLDYLRMAVNRHQaTRDFLLDSLP 94
                     68**************************************************************9865278*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.4E-161679IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.1E-171797IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.7E-181894IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MAEEDQNPLP DTLIPSIPVG RVKKIVKIDK EITRISSEAL FLISGATELF LRFLGEESAK  60
IAAEKKRKTI KLDYLRMAVN RHQATRDFLL DSLPIPSQPS DHPPVDPTVK KKHVLAPNSH  120
RIESFFTKTP KTDALRNEDP DGEDKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744963.12e-63nuclear transcription factor Y subunit C-5-like
TrEMBLA0A0K9RYT15e-53A0A0K9RYT1_SPIOL; Uncharacterized protein
STRINGXP_010682780.12e-50(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.14e-40nuclear factor Y, subunit C13