PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020578-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 258aa    MW: 29068.8 Da    PI: 6.2836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020578-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-184796356
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++ge
  AHYPO_020578-RA 47 YRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGE 96
                     9****888.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.01246103IPR001471AP2/ERF domain
SMARTSM003801.3E-3546109IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2146103IPR016177DNA-binding domain
CDDcd000187.73E-3347104No hitNo description
PfamPF008476.4E-134796IPR001471AP2/ERF domain
PRINTSPR003671.3E-104758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-3247104IPR001471AP2/ERF domain
PRINTSPR003671.3E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MINLRYKIKN GSKRIRLDNS NDVMTKKINN DNDDDGCKKD GHNHLMYRGV RKRSWGKWVS  60
EIREPRKKSR IWLGTYPTAE MAARAHDVAA LAIKGENAFL NFPEIAHLLP RPASTCPKDI  120
QAAASKAAEA EPSRSCQATS STSSVSSSNT SSSSEEHSVE WSGSVGSTTI HDDDHDHIHH  180
NHDHDHDHGN DDYDESLFDL PDLVVDSKNQ RDVGYYSHST WQIAQGDAMI FGFHDDHDHE  240
DDQKHINNLW MMSLLEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1934103272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893191e-44AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748599.15e-83ethylene-responsive transcription factor ERF043-like
SwissprotQ8LBQ71e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0K9RV341e-66A0A0K9RV34_SPIOL; Uncharacterized protein
STRINGXP_010692104.12e-76(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.14e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]