PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020452-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 362aa    MW: 40785.8 Da    PI: 7.0393
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020452-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07113133526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+ f+r G C+ Gd C +aHg
  AHYPO_020452-RA 113 ACPEFRR-GSCRKGDACEYAHG 133
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.5036097IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906109135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4112135IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5113133IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.024143167IPR000571Zinc finger, CCCH-type
SMARTSM003569.1143166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMIHQHHLPS VDIPHWDFPY EDNPTTPIFS PQTNDYFSAL KRYLPSSEFD DSDSESSDLS  60
FDSFNCDNFR MYEFKVRKCA RGRSHDWTEC PFAHPGEKAR RRDPRKYHYS GTACPEFRRG  120
SCRKGDACEY AHGVFECWLH PARYRTQPCK DGPHCKRRVC FFAHSPEQLR VLPSLSESPS  180
CRLGCDSVEN LRVLPPLPES PPSGYSCESR LKLGVGLNGY SPTSVFDSFP DSPPMSPSFG  240
CNSVSELANT MRALQIGKLG MGPRNVWGAQ PQISGSPMSP RGYMGSLPAT PTRTPTRSGL  300
SLVDPWESYN EEEIQMERVE SGKDVRAKIY AKLSKENSLE RERVDSVSSM PDFGWVSELV  360
K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668905.11e-179PREDICTED: zinc finger CCCH domain-containing protein 23
SwissprotO821997e-96C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A0K9RVW91e-172A0A0K9RVW9_SPIOL; Uncharacterized protein
STRINGXP_010668905.11e-178(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-90C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]