PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_020247-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | NAC | ||||||||
Protein Properties | Length: 197aa MW: 22548.3 Da PI: 9.855 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.9 | 1.1e-45 | 4 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Pt+eel+++yL++k +++ el++vi+++diy++eP++Lp ++++ ++w+fF+++++++a+g r+nr+t+sgyWkatg+ AHYPO_020247-RA 4 LPPGFRFYPTEEELITFYLHNKFYNQRSELDRVIPSIDIYNFEPSQLPGlageLCHGDMEQWFFFMQQQEREARGGRPNRTTSSGYWKATGSPS 97 79****************************999***************545654445778********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++++g+kktLvfykg+ap+g+kt+W m+ey++ AHYPO_020247-RA 98 YVYSSqTNKVIGVKKTLVFYKGKAPTGRKTKWKMNEYKA 136 ***9867778***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-47 | 3 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.297 | 4 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-24 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEQLPPGFRF YPTEEELITF YLHNKFYNQR SELDRVIPSI DIYNFEPSQL PGLAGELCHG 60 DMEQWFFFMQ QQEREARGGR PNRTTSSGYW KATGSPSYVY SSQTNKVIGV KKTLVFYKGK 120 APTGRKTKWK MNEYKAVNQQ QQHNNNNNNN NASSSTTTAV PELMHGLSLY RVYITSGCAR 180 AFDRRPAGRI LGNIGAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-32 | 4 | 150 | 17 | 156 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-32 | 4 | 150 | 17 | 156 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-32 | 4 | 150 | 17 | 156 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-32 | 4 | 150 | 17 | 156 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-32 | 4 | 150 | 20 | 159 | NAC domain-containing protein 19 |
3swm_B | 2e-32 | 4 | 150 | 20 | 159 | NAC domain-containing protein 19 |
3swm_C | 2e-32 | 4 | 150 | 20 | 159 | NAC domain-containing protein 19 |
3swm_D | 2e-32 | 4 | 150 | 20 | 159 | NAC domain-containing protein 19 |
3swp_A | 2e-32 | 4 | 150 | 20 | 159 | NAC domain-containing protein 19 |
3swp_B | 2e-32 | 4 | 150 | 20 | 159 | NAC domain-containing protein 19 |
3swp_C | 2e-32 | 4 | 150 | 20 | 159 | NAC domain-containing protein 19 |
3swp_D | 2e-32 | 4 | 150 | 20 | 159 | NAC domain-containing protein 19 |
4dul_A | 2e-32 | 4 | 150 | 17 | 156 | NAC domain-containing protein 19 |
4dul_B | 2e-32 | 4 | 150 | 17 | 156 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021715697.1 | 1e-108 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 8e-73 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1S3XG35 | 7e-86 | A0A1S3XG35_TOBAC; NAC domain-containing protein 90-like | ||||
STRING | XP_009597635.1 | 7e-87 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-64 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_020247-RA |
Publications ? help Back to Top | |||
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