PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_020025-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 335aa    MW: 37050 Da    PI: 6.7795
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_020025-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-0885109126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+lC+ f++ G C+y  +C+FaHg
  AHYPO_020025-RA  85 YKTKLCCKFRA-GVCPYITNCNFAHG 109
                      9**********.*************9 PP
2zf-CCCH17.57.5e-06159184126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yG++C+F H+
  AHYPO_020025-RA 159 YKGRHCKKFYTEEGCPYGENCTFLHD 184
                      78888********************7 PP
3zf-CCCH43.36e-14217242126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG C++G++C+FaHg
  AHYPO_020025-RA 217 WKTRICNKWETTGSCPFGSKCHFAHG 242
                      8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.98E-881115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-1582117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8584111IPR000571Zinc finger, CCCH-type
SMARTSM003560.001384110IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-585109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7157186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-9157186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986158186IPR000571Zinc finger, CCCH-type
SMARTSM003560.17158185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-17211246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-10213247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563216244IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8216243IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-11217242IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDFGAEAMFP GGGSDFDNWG ADGLNDQAIW ATEDEYINWN SSETPSSNYN QHHLYGSEPP  60
NKKTRSSQSG DSASNRSKAI GKMFYKTKLC CKFRAGVCPY ITNCNFAHGL EELRKPPPNW  120
QDIVAAHEEE RGVTVEQREE HQIPTISPTD LRIESQRSYK GRHCKKFYTE EGCPYGENCT  180
FLHDEQSRSR ESVAISVSPT VGGTFGPNGQ IQKPSNWKTR ICNKWETTGS CPFGSKCHFA  240
HGLAELHKFT GAADGEVRDA VATETKASSV IVKTDSSAAP SLSVPRQEFH HVGLGISSQR  300
PSNVIQVAGQ RPSQKWKGPD KISRIYGDWI DDIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021752622.10.0zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-114C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1U7VQM61e-157A0A1U7VQM6_NICSY; zinc finger CCCH domain-containing protein 56-like
STRINGXP_010671084.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-109C3H family protein