PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_019532-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20450.9 Da PI: 7.8389 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 179.3 | 2.2e-55 | 10 | 166 | 4 | 156 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkve...eenlksnvek.eesas 93 + +seq+Cy+ CnfCn +lavsvP + l+ +vtvrCGhCt+l svn+a a + l++ + +++ ++++++ ++ e ++ ++ + + s AHYPO_019532-RA 10 VPTSEQLCYIPCNFCNIVLAVSVPCNNLYDIVTVRCGHCTNLWSVNMAAAFNSLSSPWQHHHHHQPNIHQAPNFGsvgEYRIDNLGSSsKYNYS 103 6789***********************************************9999988888888888666544331002233332222022333 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaa 156 ++ +++++s + ++++ ++rPPekrqrvPsayn+fikeeiqrika+nPdishreaf + AHYPO_019532-RA 104 NKAATMRISPPISSNSTEERIINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFMGT 166 3334444455555555555558**************************************754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-56 | 12 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.56E-6 | 121 | 162 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 5.13E-4 | 134 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSSCVDQAAV PTSEQLCYIP CNFCNIVLAV SVPCNNLYDI VTVRCGHCTN LWSVNMAAAF 60 NSLSSPWQHH HHHQPNIHQA PNFGSVGEYR IDNLGSSSKY NYSNKAATMR ISPPISSNST 120 EERIINRPPE KRQRVPSAYN QFIKEEIQRI KANNPDISHR EAFMGTFPSH PFWAHAGDQQ 180 PS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052446 | 4e-35 | BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA. | |||
GenBank | BT133581 | 4e-35 | BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021741749.1 | 3e-89 | axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_021760782.1 | 3e-89 | axial regulator YABBY 5-like isoform X1 | ||||
Swissprot | Q8GW46 | 2e-59 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0K9QZA0 | 2e-85 | A0A0K9QZA0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687959.1 | 4e-88 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-62 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_019532-RA |
Publications ? help Back to Top | |||
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