PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_019492-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 801aa MW: 89100.5 Da PI: 6.4153 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.8e-20 | 134 | 189 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k AHYPO_019492-RA 134 KKRYHRHTARQIQEMEALFRECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 189 688899***********************************************998 PP | |||||||
2 | START | 141.8 | 6.8e-45 | 323 | 558 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...................dsgealrasgvvdmvlallveellddkeqW 72 la++ ++el+k+ a+ep+Wv+ s + +n +e+ + ++ea r++++v+m++ +lv +ld + +W AHYPO_019492-RA 323 LALSSMDELLKLYHANEPLWVRNSsnsmDVLNIEEYCR------LfsnwpsqhngdpfkahyneLRTEATRDKALVIMNSINLVDFFLDAN-KW 409 67899*******************55554444444444......3444556778*************************************.** PP -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEE CS START 73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpSgi 152 e ++ +a+t++ + sg g l+lm+aelq+lsplvp R+ f+Ry+ ++g w+ivd +d q + + ++ R +++pSg+ AHYPO_019492-RA 410 VELFPsivsRAKTIQILVSGvsghasGSLHLMYAELQVLSPLVPtREIHFLRYCHHnAEEGMWAIVDFPIDKFQGSFQlyHTNIPRYRRRPSGC 503 ********************************************************99**************99998899************** PP EEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +i++++ng+skvtwveh++ + p h+++ + v+s +a+gak+w+a lqrqce+ AHYPO_019492-RA 504 IIQDMPNGYSKVTWVEHAEILEEKPtHQIFDVYVHSMTAFGAKRWLAVLQRQCER 558 ********************999999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-20 | 115 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 128 | 196 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 132 | 195 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.69E-18 | 134 | 192 | No hit | No description |
Pfam | PF00046 | 6.6E-18 | 134 | 189 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.805 | 313 | 561 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-27 | 314 | 560 | No hit | No description |
CDD | cd08875 | 2.06E-103 | 317 | 557 | No hit | No description |
SMART | SM00234 | 1.5E-26 | 322 | 558 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-37 | 323 | 558 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.34E-10 | 576 | 775 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MYGDCQVALP SSMGGAGDNG IPSTADCSPL FSSTMRNPNN NNNNNNNNNN NNNNNNNVNV 60 NAFSFMSSLP PTFHPFPSIM PVKEERGKEE MMESMSGSEL NMEGHGGLSG NELDSISGDF 120 LNQNQSQPPG TSKKKRYHRH TARQIQEMEA LFRECPHPDD KQRMKLSQEL GLKPRQVKFW 180 FQNRRTQMKA QHDRTDNVIL RAENDNLKNE NYRLQAVLRS LVCPGCGGSS ILGELEYDEQ 240 HLPSRYTGRS LQSLGPTPPP ATLLPPPPSL DLDMGIYSKH FQEPMPPCTQ MLHESSDYPG 300 GGGGSCTSSG LILDEERPLA MDLALSSMDE LLKLYHANEP LWVRNSSNSM DVLNIEEYCR 360 LFSNWPSQHN GDPFKAHYNE LRTEATRDKA LVIMNSINLV DFFLDANKWV ELFPSIVSRA 420 KTIQILVSGV SGHASGSLHL MYAELQVLSP LVPTREIHFL RYCHHNAEEG MWAIVDFPID 480 KFQGSFQLYH TNIPRYRRRP SGCIIQDMPN GYSKVTWVEH AEILEEKPTH QIFDVYVHSM 540 TAFGAKRWLA VLQRQCERVA SLMARNVSDL GVIQSPEARK NFMKLAQRMI KTFSVNISTS 600 GGQSWTALSE NAEDTVRITT RKIMEPGQPN GLILCAVTTT WLPYSHDQVF DLLKNEYRRS 660 QVASNSSQNV ELMLQESCTD PSGSLVVYAT MEVDYIQLVM SGEDPSCIPL LPTGFSIIPL 720 EQTKTTPDTT NNHHTTTGCL LTVGIQVHAS ANPNAKLNLS SVNVINSHIC NVVHQINVAL 780 GNTNGTTSNP LGVPNAVGLV * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010677364.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A0K9RGC1 | 0.0 | A0A0K9RGC1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677364.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_019492-RA |
Publications ? help Back to Top | |||
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