PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019310-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 188aa    MW: 20496.9 Da    PI: 8.3656
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019310-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000875779123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C k F ++  L  H++ H
  AHYPO_019310-RA 57 FSCSFCQKKFFNSQALGGHQNAH 79
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-45583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.51E-65583No hitNo description
PROSITE profilePS5015711.1575784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVSEREDVEN QTSTNEQSEV SDELGNWLSL SLNTDEANTD SNVSAAQSGR GGSVKTFSCS  60
FCQKKFFNSQ ALGGHQNAHK RERGEARRHK LLMKEFGSPL SGVHVVRSLG IQPHSLIHKS  120
VIRENPVLGG ARFRDFNCGL GTTSSTGSPC VVGERIALVW PGSFRVQKQH PSKQMMINSE  180
IDLNLSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679697.19e-73PREDICTED: zinc finger protein 4
STRINGXP_010679697.13e-72(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.16e-18zinc finger protein 7