PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_019255-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 316aa MW: 35743.6 Da PI: 4.7039 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 56 | 109 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k AHYPO_019255-RA 56 KKRRLSLDQVKALERNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 109 5668999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.1 | 3.6e-41 | 55 | 147 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++d+lk + e+L++++++L +e+ke AHYPO_019255-RA 55 EKKRRLSLDQVKALERNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKSSFDTLKLNYESLQQDKDALLKEIKE 147 69**************************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.76E-19 | 40 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-17 | 54 | 115 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.6E-16 | 56 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.05E-16 | 56 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 58 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.8E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.8E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.4E-17 | 111 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MKRLNSSDSL GALFSMCPSS DDHSPRNNIY SRDYQCMLDG LDEDGCIEES GHVPEKKRRL 60 SLDQVKALER NFEVENKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLERDYGVL 120 KSSFDTLKLN YESLQQDKDA LLKEIKELKA KLNSESNKSF IKEEMSLFES DHVNEIDIEP 180 ITPPESMSDG SENAKLIKVK NVFAEFKDGS DSDSSAILND HDNSPNASNS SSGQIFQTQQ 240 LIMSPNSSSP PSSINGLSFS DSRSDGLGTT TQKIFDHPHF VKIEEHNFFS GEEACNFFSE 300 EQAPSLPWYC PDQWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 111 | RRARWKTKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010681015.1 | 1e-157 | PREDICTED: homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A2I4GV40 | 1e-124 | A0A2I4GV40_JUGRE; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | XP_010681015.1 | 1e-156 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 5e-68 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_019255-RA |