PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_019158-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28102.7 Da PI: 6.5181 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.6 | 4.8e-29 | 83 | 170 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k+++gkw+vtk+++eH+H+l+p AHYPO_019158-RA 83 FYNAYATHVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KVVRQRAETRVGCRAMILVRKMSSGKWVVTKFVKEHTHPLTP 170 ******************************************9988..999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-26 | 83 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MHQLDYGVDE DVDGEVVGSS VDTEGRIGDE NEMGGSSSIE GGQSQDDKMN DELSEKDLIP 60 VGEPLNEPFV GQEFESEAAA HAFYNAYATH VGFVIRVSKL SRSRRDGSAI GRALVCNKEG 120 YRMPDKREKV VRQRAETRVG CRAMILVRKM SSGKWVVTKF VKEHTHPLTP GKGRKDLIFE 180 QYPTEHDKIR ELSQQLAVEK KRVTIYKRHL EMLFEHIEEH NQSLSKKIQH IVDSVTEFEA 240 KEKDKCR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021752153.1 | 1e-161 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A251R003 | 1e-130 | A0A251R003_PRUPE; Uncharacterized protein | ||||
STRING | XP_010672213.1 | 1e-156 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-90 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_019158-RA |