PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019061-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 577aa    MW: 64268.9 Da    PI: 8.0727
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019061-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.2e-25121223199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f kvltpsd+++ g +++p+ +ae++         ++ +  +++++d +g+sWe+++iyr++++r ++t+GW++Fv+ ++L +gD+vvF+++ +
  AHYPO_019061-RA 121 FAKVLTPSDANNGGGFSVPRFCAESIfppldfsADPPVQ--KIRVTDIHGESWEFRHIYRGTPKRNLFTTGWSKFVNCKKLIAGDSVVFMRK-N 211
                      89*********************999*****96555555..8************************************************64.4 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       ++el+v+++r+
  AHYPO_019061-RA 212 LTQELFVGIRRA 223
                      88889*****97 PP
2Auxin_resp66.59.1e-23265349183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsd.ldpvrWpnSkWrsLk 83 
                      a+++a++ +vFev Y+Pr + +eFvv++e+ve a  v +  Gm++k+a eted s+ ++  Gtv++v + +d   W++S Wr+L+
  AHYPO_019061-RA 265 AIERAESDMVFEVAYYPRPGLPEFVVEAERVEVARGVYWRGGMKVKIAQETEDGSRLSWyNGTVSAVATgFDHGPWRDSWWRMLQ 349
                      5788999****************************************************9******9764899**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-28115229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-32115225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-21120222No hitNo description
PROSITE profilePS5086312.675121224IPR003340B3 DNA binding domain
SMARTSM010192.3E-21121224IPR003340B3 DNA binding domain
PfamPF023627.2E-23121223IPR003340B3 DNA binding domain
PfamPF065079.3E-19265349IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MASDHRQRQC YYQQQQQERE VDALIWKACA GSLIHVPKPN SRVYYFPQGH IEQASSPVSL  60
SSVYKSSVLC RVVRVSFLAD PDTDEVFVKF LLEPLKSTSS GFALEFLGER GGEKRNDVVS  120
FAKVLTPSDA NNGGGFSVPR FCAESIFPPL DFSADPPVQK IRVTDIHGES WEFRHIYRGT  180
PKRNLFTTGW SKFVNCKKLI AGDSVVFMRK NLTQELFVGI RRASRLINDA MLPWGIVQKP  240
ARLSIGGVLS RSNRGKVPAE AVVEAIERAE SDMVFEVAYY PRPGLPEFVV EAERVEVARG  300
VYWRGGMKVK IAQETEDGSR LSWYNGTVSA VATGFDHGPW RDSWWRMLQV AWDEPEILQN  360
MKNVSPWQVE PIVPMLPIHT SVPAIKKFKG VQNSGLLTNG EGNPPIPSMG FNSLMGQFSP  420
SYLNYNTFPA GMQGARQNLL FLSTLPSIVN YSTHKGHRDD NVDSTPQKME AVTTNLNIGS  480
SPSETPSPDS QNSVQLFDVA GTDQRSCDLS KKIITSFQLF GKQIHMEQPL TTTEAIGCTK  540
YDDHFTEGVR NTLDISSSVS RNKLDDRPRA HALNPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-672137051388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672559.10.0PREDICTED: auxin response factor 17
RefseqXP_010672606.10.0PREDICTED: auxin response factor 17
RefseqXP_010672677.10.0PREDICTED: auxin response factor 17
TrEMBLA0A1U7ZB881e-178A0A1U7ZB88_NELNU; Auxin response factor
STRINGXP_010672559.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-124auxin response factor 17