PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_018887-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 98aa MW: 11452.1 Da PI: 9.4089 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.7 | 6.2e-21 | 11 | 97 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GF+ r+ ++kk+k+++ i+ + +C+k+g++++ +++ ++r+r+ +r +C+a++ ++ k+g+wev+k+++ H+H++ AHYPO_018887-RA 11 QFYKAYASMCGFTERMGTQKKTKETNDIYLKYIYCNKQGYNNDPTSA--INQRKRSLKRAECRAMVGLRACKEGHWEVYKFVESHTHHF 97 6******************************************9988..88999*********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.6E-18 | 11 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MHFATLEEGV QFYKAYASMC GFTERMGTQK KTKETNDIYL KYIYCNKQGY NNDPTSAINQ 60 RKRSLKRAEC RAMVGLRACK EGHWEVYKFV ESHTHHF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010678162.1 | 4e-26 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | K4Q0F0 | 6e-25 | K4Q0F0_BETVU; Uncharacterized protein | ||||
STRING | XP_010678162.1 | 2e-25 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 6e-12 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_018887-RA |